RNA id: XM_026917019.2


Basic Information

Item Value
RNA id XM_026917019.2
length 1693
RNA type mRNA
GC content 0.52
exon number 14
gene id tead3b
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9639105 ~ 9672645 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCTCCTTCATTTTTTCTCCACTAGTGAAGTGCGTGAATTTCATACCAAACCCATACTTTGCATTCCACCTTTACTGTCAAACCAGGAGAAATATTACTGAAAACAATAAGCGGCTCAGGCAAGAAATAGGTGTTGAATTAATGCTATTTCGTCCTTCTGCTGTCCATCTAGACGCGTTTTCCTCATTTAAAGGACTGCcgagaagaggaggaagaagaggaggaaggacAGGGCGACCTGCTGGGAAGACAGTTCCCTCAGACAGATCCCACTACGGTTACGGTCCCAGAATAGTGTGTGGGCTCGTGGCAGGGCCCGATCAGAGCCGGCACCATTGCGTCAAACGAGTGGAGTGCGAACGGGAGCCCTCAGCAGGGGCTGGAAGATGGCGGCGATGAGCTCGATAAGACAATGGACAGTGATGCGGAGGGTGTATGGAGCCCCGATATTGAGCAGAGTTTCCAGGAGGCACTCGCCATCTACCCACCCTGTGGCCGCCGCAAGATCATCCTCTCAGATGAGGGAAAGATGTATGGCCGTAATGAACTCATTGCCAGGTACATTAAGCTGAGGACAGGAAAAACCCGCACAAGGAAACagGTTTCTAGCCATTTGCAGGTTCTTGCCCGGAGAAAATCTCGCGAAATACAGTCAAAGCTGAAGGCCATGAACTTGGATCAAGCATCCAAAGACAAGGCTCTTCAGAATATGGCGTCGCTGTCCTCGGCCCAGATAGTGTCTCCAAATCTGATCAAGAGCCAGCTTCCTCCACTGCCACAGCCGCCCTATGCACCTCCCCCTCGGTTTTGGCCGACTCCAATCCCAGGACAACCTGGACCCTCTCAGGACATCAAGCCTTTTGCACATACCTACACAAACCTATCCGGACCTGTTCCACCTCCCATATCAGCGTATGAGCCTTTGGCACCCCCTCTGCCCCCAGCGGCCACCGCCGTGCCTGTGTGGCAGGACCGCACCATCGCCTCTTCCAAGCTACGCATGCTTGAGTATTCCGCCTTCATGGAGGTTCCCAGAGACCAGGACACTTACAGCAAACATTTGTTTGTGCACATCGGTCAGACCAACCCGTCATACAGCGATCCCCTGCTAGAGGCAGTGGACATACGGCAGATCTACGACAAATTCCCAGAGAAGAAGGGAGGGCTGAAAGAGCTGTATGAAAAGGGCCCACAAAATGCTTTTTTCCTGGTCAAATTCTGGGCGGATCTGAATAGCAATGATATGCAGGATGGGCCTGGATCTTTCTATGGCGTCAGCAGCCAGTACTGCAGCACTGAGAATATGACCATCACCGTCTCCACAAAAGTCTGCTCGTTTGGCAAGCAGGTGGTAGAGAAAGTAGAGACGGAGTATGCAAGAGTGGAAGGAGGaaagtgtgtgtacaggatCCACCGCTCGCCCATGTGCGAATACATGATCAACTTCATCCACAAGCTCAAGCATCTGCCTGAGAAGTACATGATGAACAGCGTCTTGGAGAACTTCACCATTTTACAGGTGGTGACTAACAGGGAAACACAGGAAACTCTGCTTTGCATAGCATTTGTATTCGAAGTGTCGACGAGCGAACACGGGGCACAGTACCACGTCTACCGTCTCATTAAAGACTAGCCACTCTGCCAGAACGGGTTTTGCCAATGGACATTCTGTCTTGTTGTCCAGACGTCAGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28657 lncRNA upstream 23643 9613112 ~ 9615463 (+) True G24178
TU28656 lncRNA upstream 26493 9612389 ~ 9612613 (+) True G24177
TU28638 lncRNA upstream 47460 9591428 ~ 9591646 (+) True G24162
TU28636 lncRNA upstream 49521 9589318 ~ 9589585 (+) True G24160
TU28635 lncRNA upstream 50598 9588297 ~ 9588508 (+) True G24159
XR_003403551.2 lncRNA downstream 67481 9738017 ~ 9739451 (+) True LOC113534952
TU28774 lncRNA downstream 88049 9758585 ~ 9758966 (+) True G24283
TU28780 lncRNA downstream 98752 9769288 ~ 9769501 (+) True G24289
TU28873 lncRNA downstream 198071 9868607 ~ 9954984 (+) True G24354
TU28891 lncRNA downstream 267861 9938397 ~ 9941183 (+) False manbal
XM_026925408.2 mRNA upstream 2369 9628575 ~ 9636737 (+) True LOC113533334
XM_026925416.2 mRNA upstream 2369 9628575 ~ 9636737 (+) False LOC113533334
XM_034298483.1 mRNA upstream 35600 9596669 ~ 9603506 (+) False LOC113532547
XM_034298481.1 mRNA upstream 35601 9596078 ~ 9603505 (+) True LOC113532547
XM_026928030.2 mRNA upstream 70579 9540610 ~ 9568527 (+) False anks1ab
XM_026929606.2 mRNA downstream 11795 9682331 ~ 9692966 (+) True smpd2b
XM_026929596.2 mRNA downstream 11795 9682331 ~ 9692966 (+) False smpd2b
XM_026913704.2 mRNA downstream 23963 9694499 ~ 9711838 (+) True pkp1b
XM_026921885.2 mRNA downstream 118127 9788663 ~ 9855541 (+) True nav1b
XM_026925788.2 mRNA downstream 185435 9855971 ~ 9868275 (+) True mybphb
XR_004577034.1 other upstream 42252 9591941 ~ 9596854 (+) False LOC113532547
TU28587 other upstream 184644 9450925 ~ 9454462 (+) False hmga1b
TU28588 other upstream 184644 9450925 ~ 9454462 (+) True hmga1b
XR_003402786.2 other upstream 3886002 5717530 ~ 5753104 (+) False rbl1
TU26124 other upstream 4430242 5208346 ~ 5208864 (+) True G21901
TU28879 other downstream 224709 9895245 ~ 9907171 (+) False LOC113530691
TU29055 other downstream 527430 10197966 ~ 10198455 (+) True G24500
XR_003403740.2 other downstream 1083979 10754515 ~ 10754622 (+) True LOC113537259
TU29627 other downstream 1235664 10906200 ~ 10908572 (+) True G25029
TU30526 other downstream 2533993 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2

Expression Profile