RNA id: XM_034313088.1


Basic Information

Item Value
RNA id XM_034313088.1
length 2039
RNA type mRNA
GC content 0.40
exon number 5
gene id chmp4ba
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5476750 ~ 5489524 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCGCTCTATTACGTCATTACGTGACTCATTCCGCGTGACGAGCTGTCGTCACAGGGCCTGGACAGGGAAGAGTGAGGAGAAACAACAACACATCAAATTCTGTGTGTTCAGTGCAGGGTGCTAGTTTAACGTCACTGCGTTTCTTTTATATACCGGCATACAAACTAGAAGATTTTGCGATCCCCCACTAAAGTTTCACACACGGTTTTACTGTCGTTAAAAGCCAGGATGTCTTTGTTTGGGAAATTGTTTGGTAGCAGTGGCAAAGGAGGTAAAGCTCCCAGTCCTCAGGAGGCTATCCAGCGACTTCGAGATACAGAGGAGATGTTGACGAAGAAACAAgaatttctggaaaaaaagatTGAACAGGAACTGCTCACGGCAAAGCGAAACGgaacaaagaacaaaagagCTGCACTACAAGCATTGAAGCGCAAGAAGCGATATGAGAAGCAGTTGGCTCAGATTGATGGAACATTGTCCACCATTGAGTTCCAGAGGGAGGCGCTGGAGAAtgccaacactaacactgaGGTCATCAAGAACATGGGTTTTGCTGCTAAGGCCATGAAAGCTGCTCATGATAACATGGACATAGACAAAGTTGACGAACTCATGCAGGATATCACAGAGCAGCAGGAGTTGGCACAAGAAATCTCCGATGCAATTTCTAAGCCTGTTGGGTTTGGCGAGGAGTTTGATGAGGATGAGCTGCTGGCTGAATTGGAGGAGTTGGAGCAGGAAGAGCTAGATAAGAACCTGCTAGAGATTGGAGGCACAGAGAATGTACCGCTGCCAAATGTACCCTCCACATCCCTACCTTCTAGACCAGcaaagaaaaaagaagaggaggatgatgatgacatGAAGGACCTGGAGGCTTGGGCAGCCAATTAATCCCTGCTGTTGGTCACAAAAACATACCCCCACATCACACGTAAACAGTTGCAGCTGGTCAAACCAGACAGATTTGATGGTTTAGTGCGAAGTTTTTTGGACTGATAAACACTGCAACGATGAAACAAATACTACTACTCAAAATACATCCTGCCACACTTTTAGAATTTCACCACAAGTTATGTCATCAAGCATGATAAATATTAAGCTGCATATCTCTCAATGCTCTTCCTCATTGGTGGACCtagaaaaaagtatgttttttggAAGCCCCTCTATTATGTGAAGTATTTATCCACATCTTGTTCTCAAACACTCCCATGGCAAAGAACCCTGTATAaattatgtgtattattttaaatgggAAAGGAAACAGATTATTCCTATGTccacaaaacatttacattcactTGAAAGGTTTATGATTTATCTGTTTCTTCTTCCCCAACTATTAACACTGGGTTATACAAACACTAATTTCTTTATGAAAATTGCTTTATTGAAAATAGGATTTCTTTGTCCCCTGCTGTATTGAGCATAAAGTAGAAGAGTTCTTGAGTGGAATAGTCAAAACCATGACCAAAGCTCATCAAGCATATTTATGTGCTGGTTTTGAAAAATTCTCTTGAAGTGCCCTCTTTGTAAACAACTTTTGAAACATGTCATGTGAATTACACTTTTCTGATATGCTTGTGTAAGCATGTATCTGAATGACTCTGATATTTAATGCTACTAATGatttcatgatttattttgagAAAGTTCTAGATTCCCAAGGAATGATGTGTCTGCTTTTTAAGTatgaatgtgttttgcaaaTGGGGTTAGGGATACAGATTAAtgtaatgtcattttatttttgcagtgttggtTATGCTTCTGGGTTCATCCTGGTacattggtttgtttgtttttttttttccttagatTTTCTCTTGTTTAAAAGTAACTTTATAAGCAGCAATTTATGACACTTATATGGCATTTAGATTTATTGACATTAGTGTTTATGTGCAAAGCTACTTATCTTTGCTGGTAAATGCAGCTGTCTTCTTTCCCATTTACAGCCTCCCCATCTTGCATTATATTGACATGCCTTTCAGTGTCcttttaacaaaaattaaagGTTTTGTTAAATGAC

Function

GO: NA

KEGG:

id description
K12194 CHMP4A_B, SNF7, VPS32A_B; charged multivesicular body protein 4A/B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26276 lncRNA upstream 9269 5467266 ~ 5467481 (+) True G22036
TU26269 lncRNA upstream 13594 5437553 ~ 5463156 (+) True G22033
TU26267 lncRNA upstream 13594 5452363 ~ 5463156 (+) False G22033
TU26271 lncRNA upstream 32906 5437553 ~ 5443844 (+) False G22033
TU26266 lncRNA upstream 39281 5435766 ~ 5437469 (+) True G22032
TU26287 lncRNA downstream 4198 5493722 ~ 5552971 (+) False mych
XR_004579880.1 lncRNA downstream 5401 5494925 ~ 5500908 (+) True LOC117599465
TU26261 lncRNA downstream 12121 5501645 ~ 5503231 (+) True atp5f1e
TU26298 lncRNA downstream 58952 5548476 ~ 5610231 (+) True G22054
TU26352 lncRNA downstream 211204 5700728 ~ 5700976 (+) True G22097
XM_034313879.1 mRNA upstream 220771 5239845 ~ 5255979 (+) True nhej1
XM_026918678.2 mRNA upstream 220771 5239851 ~ 5255979 (+) False nhej1
XM_034313875.1 mRNA upstream 220771 5240319 ~ 5255979 (+) False nhej1
XM_026920371.2 mRNA upstream 322323 5140401 ~ 5154427 (+) True LOC113530419
XM_026920348.2 mRNA upstream 349154 5122720 ~ 5127596 (+) False wbp4
XM_026917125.2 mRNA downstream 12128 5501652 ~ 5502394 (+) False atp5f1e
XM_034312823.1 mRNA downstream 33400 5522924 ~ 5538437 (+) False ergic3
XM_026915801.2 mRNA downstream 33401 5522925 ~ 5538437 (+) True ergic3
XM_026915809.2 mRNA downstream 33401 5522925 ~ 5538437 (+) False ergic3
XM_026912152.2 mRNA downstream 60316 5549840 ~ 5552974 (+) False mych
TU26124 other upstream 267886 5208346 ~ 5208864 (+) True G21901
TU26030 other upstream 388172 5088134 ~ 5088578 (+) True G21835
XR_004579614.1 other upstream 717105 4754266 ~ 4759645 (+) True spega
XR_003404681.1 other upstream 816627 4660009 ~ 4660123 (+) True LOC113545978
trnah-gug_1 other upstream 1125002 4351677 ~ 4351748 (+) True trnah-gug_1
XR_003402786.2 other downstream 228006 5717530 ~ 5753104 (+) False rbl1
TU28587 other downstream 3961401 9450925 ~ 9454462 (+) False hmga1b
TU28588 other downstream 3961401 9450925 ~ 9454462 (+) True hmga1b
XR_004577034.1 other downstream 4102417 9591941 ~ 9596854 (+) False LOC113532547
TU28879 other downstream 4405721 9895245 ~ 9907171 (+) False LOC113530691

Expression Profile