RNA id: XM_026917147.2


Basic Information

Item Value
RNA id XM_026917147.2
length 4516
RNA type mRNA
GC content 0.46
exon number 12
gene id kank4
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 22048516 ~ 22101105 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACGTTCTCTGGGTCACTGCATCTGAGGCAGCAGAACATGTGAGTTTAACTGACATAAAAACAGAGGAGGCTTGTCAGGTTGTCAGGGTGGGACTGCAATGGTGGAGTGAACATTCCAGAGAGTATGAGGTTGTCAGGTTGAATCtggaaggaaggagaaaagcGACAGTAAGAAAAGCAGTCTATAGAGAAGTGGAGAGCGACTGAATATTTTGCTACACATGCCAGGCTCCTCTCATCTCTAAAGAACAGATGTACTGTGTTCAATTCCCTCCTCCAGATGTCTGCACTGTGGACTAGTTAGATCTGGAAGCTGCTATCAAGAAGAACAAGACTATCTACTAACATttagaacagagagagagagagggagagtcgatgacactgaaacacacaaatgatGGACAAGAAAAGTGCAAATGGCTTTTCTGCCAAGGCCTCTGAGAGTGGGGGACAGAGGAAACAGCTGCCATATTCTGTGGAGACACCCTACGGCTTTCACCTGGATCTGGACTTCTTAAAATATGTTGATGACATTGAGAAGGGTAATACCATCAAGAGAGTGCATATACAGAGAAAGAACAGGGGGCCAAAATATAGCACACTGCCACGCAACTTCAGCCTTCCTGGACATGGTGCAAGACCTGCAGCCAAAGACACATGGTCCAACACATCTACCCTGGGATCCAAGCCCAAGTCACGTGTTACTGAGGTCCAGCAACTTTTTGATTTCAGAGCCAGCAATGACAATgctagcagcagcagtagcagccaAAGCACCCCTGCTGGTCAATCAAATGTGCAAGGTAGCAGCTGCCTCTCTTCCCCCAAAACTGTGGATCAGGTCCATATTCAGGCTTCCCAAGACCAACAGGCTTCCCTGAGCCTTAACGTGAGGCCTCACTTGTTTCGGGCATCCAGCATGCCTGTTAATGTCCCACACAGGAAATCTTCAGACTCTACCGATGAACAGAGCTCTCAATCACAGAATGGCTCAACTGAAAAACTATTTCGCCCTGTGGATAGTAGTGACAGAAGAGGGAGTATTCCTCAAGACAGGGCCAGCCTGCATCAACAGATAACGGCAGCACTGAAACGGGTGCGCGAACTAGAGGAGCAGGTCAGGACGATCCCTGAGCTAAAGGCTCAGATTTGCTCCCTAAGAGAAGAGAGGGAACATCTGCTTCAGAGAATCCAAACACAGTCTCATGTAAAGATCCTGCCAGAAGAAGAGCCAAGTGAAAAACCCCAACCAGAATCCCAAGAAAGTACTAACCTTCCTTCAGCAACAAAACAGCAAGAAGCTCCGTCCCTTTTCCAGGATACTATGAGTGACAGTCATACTAAAATTCCAGAAAAAGAGTCAACTGTAGATAAACTGGCCCAGAACATTGAAGGACCACCAACATACACAGTTTTTGGAGAAGGACCAGTTCTAGATGTGGTCTCTGTTCCAGTGATACTCATTGAGAAAGCCGAAAGTCCAACTGATTCAGAAGAATCAGAGAGAATGGTGGAAGAATCTGAACATGAGACTGAAGTATCTGAAAAGCTTTCAGAACAAGGATTAGAAGAACAGGAGGAAAAGCCAGAGACCTCATTAAAAGATAAAGGGTCTGACCTAACAGTGGAGTTTTCCATAACAGAAGAAAAAGGAGATATATATGAAGGCACAGTGTCCCAAGATGAAcctgaaaaaacagaaacaattgACTGGTCTGTTGTAGAAAAGGAAGAACCTGCCTCCACAATAAATGAAGAAGATGTTCTCACAATCCAAGAACTCCAAGAAAAAGTCAAGACATTGGAGGAAAGATTAAGGCAGGTCAGCTGTGATCTGGAAATGACAAGCTCCTTACTGAGAGTACAGATGGAGGAGAATAGACAAAAGGACGTAACTATTCAGGAGCTAagtgaaaaagtaaaagaacCCATTGCAGTCAGTGTAGAGCAAGAGTTGGAGGTTCCACCAGAGACTGAGCAACTTCCACCACACATTACTACTTGTGATGCGTCAGTCAATACTGACAGCAAGCATGTGTTAGAAAAAGCAGTCCTAACAGATATTGACCTAAAACCTATTGACACTATCGAAGAAACAGACCAAATGTGCTGTAGTACTCAGACAAATATCGTTGAGACGCGAGAAATTGAGGTGTTAGCACAGGTGATGACATCTGAAAAAGTTGTGGGGGTGGAAATTGTTACATGTGACCAGGCAGTTGAAACAGATGTGTATGAAAATAGCTTGGAGgccaaagaaagaaaggaaattgaAGCTGCAGATGAAAGATACAGTGTATATAGAGATGATGTAGACAAAGAGAAAATGATTGAAAGCATTATCATTGAGAGCGATGTGGCTGAAGAGTATGTTATAGTAGAAAAGACTGAAGGTGATTTGGTTGGGATAGTACCCAAGGATAATGCAAATGCCAAGTCCTTGGCCGGGGAAAATGAATTGGTGGAGAATGTTGAAACTGTGGCAATAGAAACCATAAAACCAGATACAAGCACAGATGAACCATTACAGCATGACCAAAAGCAAGGGCAAGGACAAGACATTCAGCCTCAACCTCAGAGGTCCACTGAAGCTTCAGCATCACCTGCAGCCATAGGCCAGGTTGTCACTCGGATCCAAGGTCTTCTCAATGAACAGTGGGCCAGCCTGGGGAGTGGGAGCCAGGAACCAAAAGGAGAGGGCTCACAGAAACAGCCAGTCTCAAAGATCAGCTCCATCCAGAGTCACCTCCGAGGTTCACTTAGTGCCCTTTCAGCCTTCTATTCTCCTGTTCAAAAAGGAGGTGCAGCAAAGCAGTCAGGCCTCAAATCTATCATGAAGAAGAATGACTGTCCTGACAAGCACGGGACTGGAGGAGCCAAGAAAAACCTGAAATTTGTTGGCGTAAATGGAggCTATGAGACAACCTCCAGTGAGGAGTCCAGTGGGGAGGAGAATGAGGAcaagagggaggaggagaaggagaaggagaaggaggaggaggtggataGCTCGGACACGGAGGAACAGGGAGAGGAGAGTGGAGTGGcccaggaggaggagaaggaggctGCTACTGCTGGGGAGCAGGCTGAAGAAGCTCAGGCAGGGGGGTCCCAGGGCTCTGTGGAGCCTAAAGACCCCCAGGCCAGCGTTGATCCCCAGGAGGAGCAGCCCAGCAGTGAACTTGTAGATAAAAACTTCATGGCTGCATGTCACTACCTAAAGGACCGAATGGCAGAGGTTGCTGCCCCAAACAAAGAGATGAGGCAGGTTCTGATGGTGCTCTATCAGGAATGGTTCCGTGTATCCAGTCAGAAAGAGTCCCAGGCAGATACGGTCACTGTGTATCTGAGAGAAGTTGGAAATCACACCCCCACTCTCCTGCGCTATATAGTTAATCTTGCTGATGGCAACGGCAACATGGCCCTACACTACAGTGTCTCCCACTCCAACTTCCAAGTAGTCAAGCTCCTGTTGGATACCGGGCTTTGTGAGGTGGATCATCAGAACAAAGCCGGCTACACGGCGATCATGTTGGCAGCTTTGACTGCAGCAGAAGGACCCGAGGACATGGAAGTGGCCCAGCACTTACTGAGCCTGGGCAACATCAATGCTCGGGCAGGCCAGTCTGGTCAGACAGCACTGATGCTGGCAGTTAGTCACGGGCGCACAGCGATGGTGCAGGTTCTTCTCGACTGTAAAGCTGATGTGAACACACAGGACCAAGATGGCTCCACAGCACTGATGTGTGCCTGTGAACACGGCCACACTGAGATAGCCAAACTACTGCTAGACAGACCTGAATGTGACAATAACCTGAAAAATAAGCATGGTCAAACTGCGCTGTCTGTGGCCATCAAGTTCTCCCACCCTGAGCTAGTCGACCTTCTGAAGGCCCGTGCTGAAAAGGCTGGAACTTCACACACTACAAGTCTTCTCTGAGGTTGCTTGTACACTACCGCTGCAGTAGCAACAGTACCTGCATTCACCCTCCAGCTGCCTCAAACAGACATACTGACCAGTGAGACTTATTTGGAATGGAAAAACGGACTTTCCTCAATTTGGATAAGCAACAGGCCAAGTACTTCTTTAAAGACAGTTCTCTGAAGCGCAGTTCAACGTCAAAGCTCTTAACTTCATGTGGATAAAGCATGGTACATCATTACATGTTGTGTCCTGTTTTTcaagtattattatatttttgtcaaGTAGAGAGCATTATACATGAATGTTACTATAGAGTCTATCAGATACAcactatatttattttatattgcacCTTgctatactgttttttttatcctccTCTAAAATATACAAGGCCTGTCTGAATATAACCTGATGAGCAAAATTGTGTCTTCCATCATGAAGGTTATCAGGTAATGCTTTTCATGTTAAATCTTAAAAggtttattttgtctttgtttttagcATGAGGCCAATAAAATTGCAGGATAGCTCCCATACCAAATACATTCACTCAATAAAATGCAACAGAAAACATTGGGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37227 lncRNA upstream 247835 21830726 ~ 21830939 (+) True G31567
TU37225 lncRNA upstream 252039 21826498 ~ 21826735 (+) True G31565
XR_004580201.1 lncRNA upstream 436424 21636184 ~ 21642350 (+) True LOC117599889
TU37020 lncRNA upstream 465896 21609233 ~ 21612878 (+) True G31384
XR_003402742.2 lncRNA upstream 672388 21403473 ~ 21406386 (+) False LOC113526220
TU37381 lncRNA downstream 47093 22148198 ~ 22148470 (+) True G31693
XR_004579707.1 lncRNA downstream 63831 22164936 ~ 22165852 (+) True LOC117599240
TU37392 lncRNA downstream 81099 22182204 ~ 22188503 (+) True G31704
XR_004579713.1 lncRNA downstream 119277 22220382 ~ 22221526 (+) True LOC117599245
XR_004579714.1 lncRNA downstream 126110 22227215 ~ 22231015 (+) True LOC117599246
XM_034313266.1 mRNA upstream 44684 21969974 ~ 22034090 (+) True dock7
XM_034314527.1 mRNA upstream 283265 21783792 ~ 21795509 (+) True si:dkey-148h10.5
XM_026923022.2 mRNA upstream 630691 21408754 ~ 21448083 (+) True jak1
XM_026923012.2 mRNA upstream 630691 21408754 ~ 21448083 (+) False jak1
XM_026918093.2 mRNA upstream 1060907 21014838 ~ 21017867 (+) True insl5a
XM_034314532.1 mRNA downstream 8843 22109948 ~ 22119632 (+) True LOC117599931
XM_026933381.2 mRNA downstream 291723 22392828 ~ 22406479 (+) True cyldl
XM_026933384.2 mRNA downstream 291723 22392828 ~ 22406479 (+) False cyldl
XM_026933383.2 mRNA downstream 291723 22392828 ~ 22406479 (+) False cyldl
XM_026933385.2 mRNA downstream 291723 22392828 ~ 22406479 (+) False cyldl
TU36319 other upstream 1061327 21014858 ~ 21017447 (+) False insl5a
XR_003403752.1 other upstream 1968549 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 2541760 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 3251854 18774770 ~ 18826920 (+) False G29569
XR_004579462.1 other downstream 497236 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 1374846 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 1919273 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 2551885 24652990 ~ 24653965 (+) False LOC117598985
TU38760 other downstream 2552080 24653185 ~ 24653965 (+) False LOC117598985

Expression Profile