RNA id: XM_034312959.1


Basic Information

Item Value
RNA id XM_034312959.1
length 1714
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC113528606
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13636997 ~ 13640777 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCgaattttgaagtgttttaatttttttaatgcattgtgCATTTCAAATGATACCAGTTAAGCAGTGAATACCAAAAACGCTCCAGGTTTTAGGACCCAGCAGAAACAATTCCGCTCCACTCGGGGCCTgtagttgcctagcaacattCAACAGAACCGTACAACAGAAGTATTCGACTTTTCTAGAGGAATAGAGCAGTTATGCCGAAGAAAGGAGGGAagaagggaggaggaggaggaggaaagcagATGACTGAGGAGGAGAGACTGGTGTTCCTGCAGCAGAAGGCTCAGGCTGAAGAAGAAAGTGCCAAAATAAAAGAAGATGTGCTCACACAGTTccttaagGATAAACTGCAGAAGGAAGAGCGGAACAGCACAGTTAACCTGCACAAGTTGAACCAGCAGTGGCGTTCGAACCTGCGCCAGACTCGAGCATCAGAGCTGCGTGAAGATTTCGCAATACTCAGCCAAACGTTTGAGAGAGTTGTGGACTGCAAGGACAATGTTATTAAGTTATTGGTGTGTGATCTGAGCGAAGCGGAGCAGCAGTCAGAACTGGCTCACAGGGCTCATCTCCAGTGTGTGGATCATCTGCTGGAGGTACAGAAAAGCCGACTGGCAGCACTAGAGTCACACTGGAGCACCAGTCTTAAGGAACTCAGTACTGAGTACAACACAGAGAGGGAACGAATTTTGAAGCTGCATCAGCAGGAGACTGAGTACCTGGAAGCAGCCACCTTTGCCTTAGAACAGCGCTATGCTGGAATAGACAGTGAGGCCAGACAGGACTATCAGAATACACGTGATGACATCAAAAACCGGaaCATTGAGGAGAAGCATGCGCTGCGTATCCAGATGGAAGGCAACGTGGAGGAGTTGTGGCAGCAGTTTCAGCATGAACAGCAGAAGTACACTGAAGCCACTGAGGAACGACAGATTGCTTTTGATTCGCTCCGTGCCACAGACCAGCGCAATGCTCAGGAAGCAGACCTGCAGATGAGACACATGCAGAAACTGCAGgaCACCATCAGTGGTCTGCGTTCTCATCTGAGCACCAGTCAGAGGGAGAATGAGGCATCTGCGTGTGGCCTTCGGGCAGAATGTGAGGAGGTTTCTCAGAAAGTCCAACAGCTCAGAGCTAAGCTCTGCTCTGCGCAGGCAGCTGAAAGAACACAGCTAGCTAATCACACTATATACAGCGATAACACAATTAAGAAACTACAGGAAAATATAGGAGAGGGAGAGACATTGTTACGTCTGGCTGATGTGTGTCGCAAGCTTGAAACTGAGCAGGAGAAGGTGCTTCCCTTTTACACATCATCTTTAACTGCTGAGGAACTGAGTCAGGAGAAAGCACATGCTATGGAGGCAATGTCTGAAGAGCCAGTACAGACAATGATGGACTATACAGATCTAGAAAAGTTCTGGCAGCGTTACAACAAGGTTCTACTGGAACGTTTGTGTTTAGAACGGGAGAAGAAGGTCCTCGGATGGGAGAACCAGCAGCTGAGGATTCTTCTCAAGCAGTACCTGGATGGAATCTCTGTTAACGACGAGATCCTACAGCAGAGGAACTCACTGCTCATGTTGTCCTGCCCATCACTCCAAGCCTCTCCTGCTTCAgaaagccaaacacacacacgcaggacAGTCATAGAGGCGGCTCATGTGGTGCAGCGCACACTGTAGAGAAGACACATGTAAGCAGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31688 lncRNA upstream 7531 13626481 ~ 13629466 (+) True G26848
TU31569 lncRNA upstream 119594 13434904 ~ 13517403 (+) True G26749
TU31582 lncRNA upstream 139268 13490161 ~ 13497729 (+) False tshba
XR_003403408.2 lncRNA upstream 263187 13351846 ~ 13373810 (+) True LOC113533310
TU31730 lncRNA downstream 181607 13822384 ~ 13825226 (+) True G26873
TU31732 lncRNA downstream 193462 13834239 ~ 13836347 (+) True G26875
TU31741 lncRNA downstream 232538 13873315 ~ 13873523 (+) True G26884
TU31779 lncRNA downstream 360154 14000931 ~ 14054690 (+) True G26921
TU32056 lncRNA downstream 529003 14169780 ~ 14172077 (+) True G27164
XM_026939261.2 mRNA upstream 12826 13620324 ~ 13624171 (+) True LOC113541997
XM_034309834.1 mRNA upstream 24116 13596849 ~ 13612881 (+) False LOC113537237
XM_026917303.2 mRNA downstream 10616 13651393 ~ 13658672 (+) True arf3b
XM_026917295.2 mRNA downstream 10627 13651404 ~ 13658672 (+) False arf3b
XM_026915303.2 mRNA downstream 21068 13661845 ~ 13685537 (+) True erbb3a
XM_026915311.2 mRNA downstream 21068 13661845 ~ 13685537 (+) False erbb3a
XM_026925313.2 mRNA downstream 45304 13686081 ~ 13694548 (+) True pa2g4a
XR_004577012.1 other upstream 135701 13498298 ~ 13501296 (+) False tshba
XR_004577009.1 other upstream 137632 13495857 ~ 13499365 (+) False tshba
trnaf-gaa_15 other downstream 1550807 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004580083.1 other downstream 1638050 15278827 ~ 15294354 (+) False fancd2
TU33403 other downstream 2540541 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 5133993 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 5176625 18817402 ~ 18817475 (+) True trnai-aau

Expression Profile