RNA id: XR_004580083.1


Basic Information

Item Value
RNA id XR_004580083.1
length 2695
RNA type misc_RNA
GC content 0.49
exon number 26
gene id fancd2
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15278822 ~ 15304494 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTCTGTCTTCAGTTACctatatataaaacagataCAAAAGTAATGTTCTAATTATCCTAAGATGCAGACAGTTTGAAATAAATGAGATTAGAAGCAAGATTACTGTTATTTATGTTTTCGGGTTGATTTGGAAATATAACGACGGTCCCTTAGAATTTACGAAACATTGACGCGGGAATCTTTCCTGAAATTCGAGTGTGTTTTTAGCACATATAGAAGAagaataatcaataaaaaaaaacatccagctcGTTACGTTTCCAGCTCTGTTTGTGGAATACCCTCTGTCCTGTACCTGCCAACAGTAGCTGAGGATGATGCGCAAAAAGAAAAGATCATCATCTGTTTCAGTTGATGAAGATCCAGCCTCACGGGATGTGCCCAAATCGAAGAAAAGCAAGTCAACTGGACGGCCAGCCAAATCCCTTTCTGCTAGCGTTCCTGATTCTGTATTTGGTCACATGCTTCAGGAATCAGGTGTCATCTTGAGGCAAGGCAACATGGCCAACGAAATCGCCGTGGATCAAGTTGTGTTTCAGAAGAGACTACAGCAGCGTTTGAGAAAGAATCCCAGATATCCCAATATCATTCAGGAGTTTATATCTGGCTTGGAATCACACATTGAAGACCCTGAGAGATTTAGGAACTGCCTGCTTCCATGTGTGCCACGTTGTGCAGGCGAGGGAGACACCAGTTCAAGCTCGTTTCAGGAGAGCCTGATGCGGATGCTTCTGGGTGTTGAGATGCTACAGACCCTGGTCATAAACACTTTGTTTGAGAAGCTTCCCGAGTTCATGTTTGAGGGTGTTGGAGAGGATGGTCTGAATATTCCACACCTCATCATTAATCAGCTGAAGTGGCTTGATCGAGTTGTGGATTGCAAGGATTTGGGCAGTAAGCTGATGCAGCTCGTGTCTGTAGCTCCTGTCGAGATCCAGCGTGACATCATCACCAGTTTACCTGAAATACTGGAGGACTCGCAGCATGGAGACATGGCCAGGGAGCTCAATGCCTTACTCCAGCAGAACACCCAGCTGACTGCACCCATCCTGGATGCTCTGTCCAGCCTCAACCTCAGCTCCGAATTACTGTCTGAGGTCCGTGGTGCTGTCATGGCGACAGTCGCCGCAGTGCAGCTGGAGGATCTCCCTGTTGTAGTGAAGTTCATCTTACACTCAATCTCTGCTTCTGACGCTAATGAGgtggtgtgtgATTTACGCAGGAAGCTGGAgttggagcagtgtgtgttgtcatCAGTGCTACAGGCCTCTCAGAGCCgtgaaaagagcaaaaaggAAAGAGGGTCCTCCAGTGTCCCAGCATGCAGCAGTAAGGACAGCGTGGCTCTGGTCCTGGAGGTCATTAAGTCCGCTGTACGTTTTCAGAAGACCATCTCTGAGGCCTGGCTCAAGGCTATAGAGAGTGTCACTGAGCCAGAAGATCACAAGgtGGTTGATGTGTTGGTTTTGCTTATTCTTCACTCCACTAACGCTAACCAGAGTAGACGTGGGGCGGAGAGAGTGCTGAAGGCTAAAGTGCGCGGCGGCCTTATTCATGAAGCACTACTGAATAAGACGTTTAGGGACTACGCTCTGGTGATGCGTGGGTATTTTCCCAGCATTCTTTCCTTGGCACAGGGACTGCTGCGTTCTACAGACTGCTGTGTAGTGCCATTTGGAGGACACATTTACAAACAAGCCTTCACTGCCTTTGACTCCTACTGCCAACAGGAAGTGGTGGGCTCCCTGGTCACACACGTGTGCAGTGGCGTGAGTGGAGAGGTGGACGTGGCACTGGAGCTGCTGTGTGAGTTGGTATCCCAGAAGCCCACAGAGATGGCACAGTACGCTGTCTTTGTTAAGGGAATTCTGGACTACATGGACAACTTGAGTTTTCAGCAGATCCGCCGTCTTTTCCATGTGCTCAGCTGTTTGGCATTTGGACAGGACCAACATGGCAGCCATATTCAGGACGACATGCACATAGTGATCCGAAAGCAGTTGTCCAGTACGGTGCCTAAATACAAACGCATTGGCATCATTGGTGCTGTTATGATGGTGGGGAGTATGGCAGCACGAAGaGACAGACCTGAAGGCTCTCAGGGAGGTACACTGCCCAAAGACACACATCGACAGGTGGTGGCACTTCTGGAGTTGGTGCGGTCGTGCAGTGAAGGCTCGGCCGAGGCCGCTGCGCTGTACTATGATGAACTGGCCAACCTGTTGCACAACCACAGACTGGACCCACTGGTGCAGACATGGATTGGCAAGGGCGTGCTGGAGGATTTCCAGGAGGACTTTGTCGTGGACCTAGGACCTGAGATACCTGGCTCATTTCCATTCACTGCCTCAGCTATGTACAATCTGGATGAAGACGAGAGTCAGGGAGGAATTGCCATTAACCTGCTGCCTCTAATGGCTAAGGATCTGCTGCACAAAGCAGACAGCAGCAGGGACGGCAGGCATGTAtctcctctgtgtctgtcttcgTTCTTCAGACTGCTGAGGCtgtgtgaggaggaggagcaccAGGGTGATCTGGAGGAGATTGATGCTCTTCTAGCTGTCCTCTGATCCTGACAGATATGGAGGTGGTAGAGAAGGTTGAGAGTCTGTCTAAGGCAGAGCGAGAGTTCCTCTGCTCTCTACTCTTTTACACCATCAACTGGTTCAGAGAGgtAGTAAATGCATTTTG

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32702 lncRNA upstream 111 15276640 ~ 15278716 (+) True G27733
TU32642 lncRNA upstream 171653 15106957 ~ 15107174 (+) True G27679
XR_004577376.1 lncRNA upstream 398403 14876678 ~ 14880424 (+) True LOC117596203
XR_004579401.1 lncRNA upstream 428706 14813879 ~ 14850121 (+) True LOC117598849
TU32379 lncRNA upstream 486205 14792411 ~ 14792622 (+) True G27450
TU32738 lncRNA downstream 177178 15471532 ~ 15471756 (+) True G27764
TU32743 lncRNA downstream 195182 15489536 ~ 15489764 (+) True G27769
TU32973 lncRNA downstream 320670 15615024 ~ 15616714 (+) True G27979
TU33046 lncRNA downstream 480022 15774376 ~ 15775849 (+) True G28040
TU33047 lncRNA downstream 482544 15776898 ~ 15778600 (+) True G28041
XM_026913091.2 mRNA upstream 4610 15255646 ~ 15274217 (+) True usp4
XM_026913120.2 mRNA upstream 23294 15249305 ~ 15255533 (+) False emc3
XM_026913112.2 mRNA upstream 23294 15249306 ~ 15255533 (+) True emc3
XM_026926121.2 mRNA upstream 32929 15240334 ~ 15245898 (+) True sec61a1l
XM_026921306.2 mRNA upstream 48375 15222690 ~ 15230452 (+) True ip6k2a
XM_026920001.2 mRNA downstream 14485 15308839 ~ 15384094 (+) True tex264a
XM_026929918.2 mRNA downstream 92874 15387228 ~ 15427200 (+) True grm2a
XM_026928781.2 mRNA downstream 137916 15432270 ~ 15440328 (+) False parp3
XM_034300687.1 mRNA downstream 138540 15432894 ~ 15440328 (+) True parp3
XM_026923867.2 mRNA downstream 146866 15441220 ~ 15446170 (+) True gpr61l
trnaf-gaa_15 other upstream 87171 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 1777531 13498298 ~ 13501296 (+) False tshba
XR_004577009.1 other upstream 1779462 13495857 ~ 13499365 (+) False tshba
TU33403 other downstream 886964 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 3480416 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 3523048 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 4240087 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 4815776 20110130 ~ 20110225 (+) True LOC113537321

Expression Profile