Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026917816.2 |
| length | 1226 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 4 |
| gene id | gadd45ab |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 17465581 ~ 17468158 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0051726 | regulation of cell cycle | biological_process |
| GO:0006950 | response to stress | biological_process |
| GO:0005634 | nucleus | cellular_component |
| id | description |
|---|---|
| K04402 | GADD45; growth arrest and DNA-damage-inducible protein |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU34197 | lncRNA | upstream | 39258 | 17423821 ~ 17426323 (+) | True | G28997 |
| TU34067 | lncRNA | upstream | 327731 | 17100226 ~ 17137850 (+) | True | G28889 |
| TU34038 | lncRNA | upstream | 411835 | 17052930 ~ 17053746 (+) | True | G28865 |
| XR_003402553.1 | lncRNA | upstream | 622196 | 16842244 ~ 16843385 (+) | True | LOC113524191 |
| TU33821 | lncRNA | upstream | 734376 | 16729214 ~ 16731205 (+) | True | G28676 |
| TU34246 | lncRNA | downstream | 62417 | 17530575 ~ 17535351 (+) | True | G29036 |
| TU34247 | lncRNA | downstream | 62417 | 17530575 ~ 17532176 (+) | False | G29036 |
| TU34335 | lncRNA | downstream | 215663 | 17683821 ~ 17688735 (+) | True | G29105 |
| TU34336 | lncRNA | downstream | 226596 | 17694754 ~ 17764773 (+) | True | G29106 |
| TU34548 | lncRNA | downstream | 615561 | 18083719 ~ 18085644 (+) | True | G29281 |
| XM_026917748.2 | mRNA | upstream | 27682 | 17433348 ~ 17437899 (+) | True | znf648 |
| XM_026917757.2 | mRNA | upstream | 27682 | 17433426 ~ 17437899 (+) | False | znf648 |
| XM_026917771.2 | mRNA | upstream | 69442 | 17392329 ~ 17396139 (+) | True | glulb |
| XM_034298932.1 | mRNA | upstream | 280898 | 17179243 ~ 17184683 (+) | True | LOC117595909 |
| XM_034298935.1 | mRNA | upstream | 280900 | 17179244 ~ 17184681 (+) | False | LOC117595909 |
| XM_026913172.2 | mRNA | downstream | 198426 | 17666584 ~ 17767280 (+) | True | tgfbr3 |
| XM_026923587.2 | mRNA | downstream | 336387 | 17804545 ~ 17840982 (+) | True | znf644b |
| XM_026925523.2 | mRNA | downstream | 450242 | 17918400 ~ 17922819 (+) | True | barhl2 |
| XM_026923802.2 | mRNA | downstream | 670897 | 18139055 ~ 18146917 (+) | True | LOC113532395 |
| XM_034311072.1 | mRNA | downstream | 670897 | 18139055 ~ 18146917 (+) | False | LOC113532395 |
| TU33403 | other | upstream | 1283278 | 16181318 ~ 16182303 (+) | False | mustn1a |
| XR_004580083.1 | other | upstream | 2171227 | 15278827 ~ 15294354 (+) | False | fancd2 |
| trnaf-gaa_15 | other | upstream | 2273925 | 15191584 ~ 15191656 (+) | True | trnaf-gaa_15 |
| XR_004577012.1 | other | upstream | 3964285 | 13498298 ~ 13501296 (+) | False | tshba |
| XR_004577013.1 | other | upstream | 3966216 | 13496154 ~ 13499365 (+) | False | tshba |
| TU34871 | other | downstream | 1306612 | 18774770 ~ 18826920 (+) | False | G29569 |
| trnai-aau | other | downstream | 1349244 | 18817402 ~ 18817475 (+) | True | trnai-aau |
| TU35395 | other | downstream | 2066283 | 19534441 ~ 19537014 (+) | False | smx5 |
| XR_003403752.1 | other | downstream | 2641972 | 20110130 ~ 20110225 (+) | True | LOC113537321 |
| TU36319 | other | downstream | 3546700 | 21014858 ~ 21017447 (+) | False | insl5a |
