RNA id: XM_026918107.2


Basic Information

Item Value
RNA id XM_026918107.2
length 3935
RNA type mRNA
GC content 0.44
exon number 17
gene id wdr78
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20999483 ~ 21011730 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTTACAGTAAAGCAGCGCGTGCAGTGAGCTGctgtatgtgcttgtgttttCTAGCTGAGTAAGGATTAACCATGTCCAACACCACGGCAAAGCAAGTGAGACCGACTTTAAAAGTGAAACCATCATCTCGAGTGATGAATCAGTCAGGATCTGGAACACTCCGTATAAACCAAAGTTCCACAAACAGGAGGAGTGTCAATGCGTCTGTGAGCCGAAGGAGCTTCTCTTTAGCAAGAGACAGTAAAGTTCTTGATAAAGTCTCCATTCAACCCCCCAAACACACTGTACAGGTGTTTGATGAAACAGGGAAGGATGTCACTCCTCGGCCTCTGTACCAGCTGCAACCCGGAGCCACGCAAACCAAACAGAGCAAAATATTCACAGGACATGACACATCAGAAGGGACTGTCTCTGACTTCCTGTCCACAGTGTACCACACCATGAGCGCAAGCTCTGCAGGACCCTTTACCATGTCTGTTTTGGGGAGTAGTTTCGTGTCGAGGGCGAGTCACTCTATCATGGAATCAGTGAGTGATGAAATGGAGGAGCCTTCTGCAAAACAGGAAACCTTGATTAGTCTCTCAGAACTAAAGATCAAGAGAGAGGAGCAGATCATGGAGCCCCAGCTGGACAATCCAGTGGATATTTACCTCAATGAGACAGAGATCATGTGCTTCCTCGACATTCCTGCAGTGTCCATTTGTGTTGACTCAGAAGAGGCTGAAGCAGTCAAGAAAAGGAACAAGGAATATACAGAAATTTGCAAGAGCAGACAGGGAAATGATAAATATATGGAGCGAGCAATGCAGACGATTAACTCATCATCTAAGTCTAAAGAAGTCCAAAGCGATCACATCACCATGGTGGAAAAAGGTTCTATGGCCACCAGATGGGACATCTATGACTTGTCTGTGAGCAGCAGCAGGGCAGAAGAGCCAGGCAGTAATACAGATGAAGAGAAACCCACCCTCCCAGATGTCTCCTCCACTCATTGTCTAGAGTCAAACACAGGTCTCCAGAGAACCATGTCCAGGGTCAGTGCCACCAGCACAGCCAGTACCTCTAGCTCCCAAAGAGAGGTGGAGGCTTCCACAGCACAGATGGTGGATGAGCCTGACTCAGAGCAGATCCTGCACTCAGAGAAGTTCCAGCAGTCCCTGCAGGTGATGGAGAGAACAGTTCTGCTGAACATCTACCAAAACAAACTAGCTGCCTACAGAGGGCTGCCCATACTGCGGGATCCAGACCATACGCTGAACCTGGGTATTGAGGACAGCGTACAGATTAAGGAGGAGGATTCGCTGAGTCCAGCTCTGGAGCTCCTCTGGGCCTTCAGCTGTGAGCTAACTAAGGGCCACAGTGTCAGCAGCATGGCCTGGAACAAGAAAAATCCAGATGTTCTGGCAGTGGGATACGGGCAGTTTGACTTCATGGATCAGAAATCTGGACTTGTCTGCATCTGGTCTCTGAAGAATCCTACTTGGCCTGAGCGGATTTTCAGCTGTAAAACCAGTGTAACATCCTTGGACTTCTCAGCCTCTAACCCCAGTCAGTTAGCAGTGGGCCTATATGACGGCACCATCGCTATCTACAATGTGCAGAGCACTAATGCAACACTGGTCTGTGACAGCAGGGACTGTGCCCAAAAACACACGGCTCCAGTGTGGCAGGTGAAGTGGATCGATCGCATACGGAGTCCATCAGGAGAAGATAAAAGAGAGACTCTGTTCTCTGTGTCTGCTGATGCGAGGATCAGTGAATGGTTCCTTCATCAAGGCCTTGACTGTACTgATATGATGAAGCTGAAGAGGATAAGGaatgagaaaacagagaaactgTGGAAGCATGAGCCATTGATCTCTCGCTGGGCAGTTGGACTGTGCTTCGATTTTCACCGCCATGATTCCAACATGTATTTGGTGGGAACGGAAGAGGGACATATTCATGAATGCTCCTGTTCATACAACGAGCAGTTCTTGGAGACCTACACAAATCACTTAGGTCCCGTCTATAAGGTCACATGGTCACCGTTTTGTCCAGATGTTTTCCTCAGCTGTTCTGCAGACTGGACCATTCAGCTTTGGAGTCGGGATCACTTTACTCCAGTGCTGAGCTTCACTTCCATCAAGAAAGCCGTGTATGATATCATGTGGTCCCCTCGCTGGGCTACTGTGTTCGGGGCGGTCAACAAGGACAGAGTGGAAATCTGGGATCTGGGAGCTAGCATTCTGAATCCGACTTTAATAAGTGAGGCCAATCCAGGGGTAAAACCAACCTCTCTGCTATTTGCCTTGAAGACAGACTGTGTTCTAGTAGGGGACAGTGAGGGCCATGTCAGCGTCTACAAGCTGAAGAACTTCACAGCAGGAGAAGGAACAGAGGTGGACACACTGAAGGACATAGTCAGCTCCACACTGGCCAGTCAGCTCTGAGAGCGCTGAGACACCACATGGGACTGTTTACTGTGGTGCTGGATGTGAATCAGCCTGTTGAACTGACCTGctctaataacaataataatctaataattaatttttcatacatagcacattaaaaaaaaatacactttgaAGAGTTTTCCAGATAAaactaaagtaaaataaaataagaagaaaggcaacatacaaatataaaataaaaaatggaaatagaGTCAACCTTGGCAGGGGGATTCCTACTGAGGTAGACAATGTTTTGCTTAAAAAATAGggataaaataattaaagaacacAAGAGCACATgatattataagaaaataatcaacaatggggtgatgtgatatagtctgacacacaaaaaaagattatCATTACCACAACAAAGTTgcttattgtcctataacagcaagtgctgaagtgttttattcctctcataccacagcgaCTTGTAATGCTGATTacgaatatttttaaaaataatgacatcaagttttatccatttataggtacatttaatgtcatggaatgtctacaaacaagttagtttcttttatcacttacattataggagctataaacagccttctatcactagcctctcttttttttataagtaaAAAGGACTTGCTGtgtttttacagagaaactgcaaagccctctaTCCTGTAGTGGAAAACTTTGGAACATCTGcttcaaacaaaaataagtcGAGAGGCCATCACACTTGACCTATGCAATAGGCTATtgtctagtgaatttttagaataAACCCAATAATTTACGGCAGTTGAGAGTCGATATcgtacagtcatccagcatacagcagcttgttttgtgcagttttagaTGTACCTTTGTCCAACAGCAGGTGAGTTTCCTGCAGAAAATTCAGGCATTGTaaaagggagacacatttttcttttttctctcaccatGGGAAACATGATGTATGTACATTATGCACTTCATAACCCCCCTTTGTCGCTCcctattttgtaatatatataaatggttCTGTATGTCATAGACACACCACATGCAATTAAACTTTGCATTAGATTGAattccaaatattttatttaaaacaagatcttggcagccgtatttttaaactagtccAATCAGGCAGTCTGTCTGCTTCTCCTCCCCcgagcatggggcagtgtgattcctgccacagtgggcctctattagtgcCTTTTACAGTtaccatttttgaccactaggtacaataataactctgtggaACTAAATGGGGAAGTGAGCATGCTTCCCTGCGAATGTGCAACATAGAGAAAGGCAATCAAGTCAGTGGAACATCGGCATTTATCTGTCATATAGCAACTTTTTTAAAACCGTTGGTCACTCAAAAAATtttattagtatattagtattTCAGCATAATTTAAAATGCATATGGAGTtctgaatgaggactttataaagattaaaattTGTTGAATTATacaccataacattaaaaccaccgagaggtga

Function

GO: NA

KEGG:

id description
K24723 DNAI4, WDR78; dynein intermediate chain 4, axonemal

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36280 lncRNA upstream 35842 20963432 ~ 20963641 (+) True G30747
TU36246 lncRNA upstream 109773 20835487 ~ 20889710 (+) True G30715
TU36252 lncRNA upstream 147807 20848491 ~ 20851676 (+) True G30721
XR_004579661.1 lncRNA upstream 217575 20770595 ~ 20781908 (+) True LOC117599214
TU36341 lncRNA downstream 81884 21093614 ~ 21093816 (+) True G30791
TU36879 lncRNA downstream 373276 21385006 ~ 21385342 (+) True G31260
XR_004580180.1 lncRNA downstream 390512 21402242 ~ 21406386 (+) True LOC113526220
XR_003402742.2 lncRNA downstream 391743 21403473 ~ 21406386 (+) False LOC113526220
TU37020 lncRNA downstream 597503 21609233 ~ 21612878 (+) True G31384
XM_026913045.2 mRNA upstream 10616 20982532 ~ 20988867 (+) True ttc22
XM_034314792.1 mRNA upstream 50846 20894024 ~ 20948637 (+) True wwc3
XM_026918093.2 mRNA downstream 3108 21014838 ~ 21017867 (+) True insl5a
XM_026923022.2 mRNA downstream 397024 21408754 ~ 21448083 (+) True jak1
XM_026923012.2 mRNA downstream 397024 21408754 ~ 21448083 (+) False jak1
XM_034314527.1 mRNA downstream 772062 21783792 ~ 21795509 (+) True si:dkey-148h10.5
XM_034313266.1 mRNA downstream 958244 21969974 ~ 22034090 (+) True dock7
XR_003403752.1 other upstream 889258 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 1462469 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 2172563 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 2182008 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 4817180 16181318 ~ 16182303 (+) False mustn1a
TU36319 other downstream 3128 21014858 ~ 21017447 (+) False insl5a
XR_004579462.1 other downstream 1586611 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 2464221 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 3008648 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 3641260 24652990 ~ 24653965 (+) False LOC117598985

Expression Profile