RNA id: XM_026918673.2


Basic Information

Item Value
RNA id XM_026918673.2
length 4376
RNA type mRNA
GC content 0.46
exon number 32
gene id sfi1
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16139483 ~ 16156080 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTAGGCTTGACTGGACTCTTATTGTGAAATGAAGCAGGCGGAAGTTTACCCAGAGACGCGGCAGTTACGGTTTGTTGTAGATTTGGGTTACCTGTAGAAATGCATTTGTGTGATGGATATCAAGAAAACTTCACTCAGGTGTCACTAAATTATGCCTAAACCAAATATATGTGGTATACTACGTCATTTAGTCTGAAAAACGAAGAAAAGATAATAAAAGTTTGCTGTCGCTGTTTGTGTGAAGAAGTTGTTTAGGTAGCGACTTGGCTAACAGTCAGGAACAAAGTGGCAAACGCTGAAGAAACACTTAAAGTCAAAGATTATgcacaaagcaaaaacacagtGTGGAAAGCAGGGTGTGTCTGCAAAGATGAGGAATGCACCAGTCCGTAAGGTCACCTACAGAGTGGGATACACGTGGAACAGAGGTGGACGACTCAAAGAGCTCAGGATACGGCATCTTGCGCGGAAGTTCCTTCACCTCTGGATTCAGAAGACTTTTGGAAGAATCACTCCATCACAGGCCAGGTCTCACCACAGTAAGGTGGTCCTGAGGAAGGTTCTGAGGGCCTGGATAGATGAGTGGTGGCATGCCAGAAGAGAATGGACGCTGACCATTAGAGCAAATTGTCACTATAAGTATGTCCTTTACAGTAAAGTGTACCAAGCCTGGTGTGAATATTTGTATAttcagaaagaagagaaaaaaaagctccagATCGCATTCATCTTTGAGAAGCGGCATCGGATGCGTGTCGTGTGGGACGGCTGGGAGCTGTATGTGGAAATGAGACGCTTAAAGCACAGGATGTATGACACAGCCCTAAAACACCACAGACGCACTGCTATTGGGTGGGTGTGGACTGTGTGGCAAACTGCACTGCAGCAACGCAGAACAGAGCATCTTCATGAAGACTTGGCTCTACAGCAATGGACTACGTCTGTACAGAGCAGAGCATGGctgcaatggaaaaaaaaatatgcacagACATGTAtcttgagagagaaagaagccaGAGCACATCTTCAATACTGCCAGCAAATCCAGAACCGTGTACTACAATGCTggattacacacactcagcacaagAAAGTTAAAAATGAGGCAAAAGCTGTGGCTAGCAGTGTATTGCGCTGCTCTGTGATGAGGAGGTACTGGTGTGCGTGGCACAGAGCTATGCaaaacagacagactgacagagttAAAGAACAGATTGCAGAGAATTTAGCACTGCATGCCACTCAACGCCGGGCATTTTCACATTGGAGAGATTATGTGCACATGTGCTCTGTAAAGGCCAAGAAAGAACAGACTGCCATTCAACATCGACACCTTCACCTGCTGcGTGTAGGGTTTAAAGGCTTGGCCCTAAATGCCACTCGCTGTAAAACTCATCAGTTCAACAAGAACATGAGTGCAAAGCATCATCGGCACACAATGATGGTGAAATATTGGAAGCTTTGGCAGCTGCGCTTGGAGCAGATTGAAGAAAGGCGTGTTCAGCCTCAAATCACTGTAGCAGTGAACTATCACAGAATTACAGTGCTGAGAGTTTATCTTCGGAGATGGAGGGAGCGCTGCAAAGAGCACAGACACATGCAGgaTTTAGAGTTGCGAGCTGACTCTTGGTTTGCAAACCGGATCCTTCCAAAATATATGAAATCCTGGACAGAGTTTACAATACAAAGAATAGAGCACAGGGAGAGGAGAGAAATAGCCGAACAGCATCATCAACAGCAGATGTACAGCTGGGCTTTTTATACCTGGTGGGAACGTTGTGTTCATCAGAAAGACCAGAGACTGGCGGAGAGAATGGCTGTGTTGCatgaagagagagtgtgtgtgtcccgtgCCTGGTCTAAGTGGCTGTGCAGGATGTTTCAGCAGAGAGAGGACAGGCTCAAGCAAACAAAAGCTGTAACACTTTGCAGTCGCACTCTTCTGCACAAAACTCTGAAGCAGTGGAGACACAATGTCAGCAGCATCCAGAGGAGTCAGAGACGTTTTGAGCAGGCAGTGGTCTATGACAGCCAGCAGTGCATGAGGcgagctctgattggctggcgtGAGTATGTAGAGTGCAGAAGAGAGAAGAACAGGCGATTGATGCAAATTGATGAGCACTATGAAGGAAGACTGCGCAGGCAAATGTTCGAGGCATGGAAGCAACACCATGCACAGACCCAGCAGATCAACCTAAGTGTAGAAAAACGTTACCAGCAACATCAGACACATCTGCTCAGGAGGATGCTGTGTTTGTGGAGGAGGAATGTGCGTCTCTCAGtcgaggaaagagagaaagagacacgaGCAAAGTGTCATCATCAGCACAGCTTACTGTCAAAGGTGTTGTTAGCATGGCATCAGAGATCAGCATTCAAAGCATTTCACCATCACCAGCAGGAGGAAGCAGTGAGAGAAGCTCAACTTCACCTGGACAGAGTTCGGATGCGGGCAGTTCTTAGGAGGTGGAGAGAGAAACACATTGAGGTGAGAGAAGAGAGGCAGTCTATGGAGAAAGCCTGCAGATATCACCGCCATATCCTGCTCAAAAAAAGTCTCAGGGCCTGGATCTTGAATAATTACCAGCACAAACACTATCAGGTCATGAAAAACAGAAGCAATGAGCTGCACAGATTAAGAGTGTGTCAACGTTTTTTTATCCTCTGGAAAGCACAGCTACAGAGCAGAAGAAGAGAGGCAGAGCTAACAGAGATGGCCCTTTGGCACTGGTGCCTGAACCTGCAGGCCAAGGTGCTCTGTGCCTGGAGACACTGGGTTGCTGAGTGTCAAAGAAAACAGAGTCGTCTTGCAGCAGCAGCTCAATTCTACAGAGATGAACTGCTACGAGAAGGCGTTACCCACATCCTTACATACGCAACCCACATGAGTGCGTTCTCTTCCAACATGGCTTTCCACAGTCATGAACagAGTTCACGGCAGCTGCAGGCAGTGGTAAGGCGGTGCGCCTTGCGATGGAAACAGCGGGCGTTATGCAAGCCTTCCAGAGTCGgagagacaaataaaaatgacaggccatctaaaacaaaaaagaatgtaTCCTTCTCCCTGCCTGAAGGCCACTACCACAGCCACACCTACCAACCAATCAGGAGTCCAGCCACAGAGCAGAGGACAGGAGATTCCACTGTAAACAAACTACTGCTGGTTCGAGCATCTAGGCTGCAACCACGAAGGCCTGATGACTTATTACACTCCCCAGCCAAAGACCTGCTGCAGCACCCAGTCAGACACAGCagacacagtcacacagaaaataatcacaaaGCAACACACCCTAGGAGTGCTCAGCCGCAGCGTGCAGGTCAGACTGACACTGGGTCCACATCACCTTTAGCATCTGTTCCAGTGGCTTGTCCATCCCCCTCTTTTTCACTTCCATTCACCCAGCCTCAGCCCCCGGGATTGTCTCTCTCCACTTCACTGCAGCCTCCTGTTCTGACCATAAAGCCTCCAGTCCTGGCCTTCAGGTCTGCTTCTACAGGAAACTCCACCATACAGATTAGTGCTGACAACCAGGAGGTCCTGCTGCCTCCTTCTTCATTTACTGCACCTAAATCACTGTGCAAGACAAGTTCTAGGCACAAGGATCCCTCACTCCTCTCCCCTCAAGATTTCATCCACCCTACTCTGCCTGGCCAAAgtgtgtgtggaagtgttttTGTGGATGCGGAAGATGATGACAATGAGGAGCCAATGCTCCTACAGACAAGCAGTGATCCTACTGAAGCTCTCAACAGGGAACTACATAATATCAGACTCGACCTGCAGAGATATCAGCAAGACAAAACTCAGATGCAGACATGGCGCAAACTTCAAAAAGTGATGAGAAATTGGCTCCAGACAACAGGCAGTGATGCAGATactgaagaaagagagagcattATACAAGAATTAAATGAGctaGAGATCCGTACTGCTGCTCTGtctgagaaaataaatgaacggAAGCCCATCATGATCTGCCATGCTGCAAGAGTCAGCAGTATAGAAAGCCAGCTGCTGAGAGCCAACGTTAACATGTAGATATTATGCATTCTGTCATCCGTGTGTTTTGCACCCCTTCTAGATTACCACTAGATAGATCAGGTAAAGGTGAGGAATTAGGAATTTCTTGAAGCCTGTAGCTATTCGCATTCAGATTCATGTCAAATTAACTTCTAGTTATCTGTCAAACCTAAACTGTCAGGAAATGCAATGATGTCTTTGACAAAATGTAGGCCAAGTGTAGAAATAGCAGCAACCTAAAGTattgtacattttcatttttaccatttatttatttgtaagaaaaacatttttatatttgtagatCTTTGAGTGtagttttatgtaaataaatagttcttttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33182 lncRNA upstream 16343 16122896 ~ 16123140 (+) True G28162
TU33180 lncRNA upstream 17151 16121977 ~ 16122332 (+) True G28160
TU33176 lncRNA upstream 33211 16106043 ~ 16106272 (+) True G28156
TU33170 lncRNA upstream 54515 16083289 ~ 16084968 (+) False slc2a11a
TU33168 lncRNA upstream 62933 16073222 ~ 16076550 (+) True G28150
TU33449 lncRNA downstream 112629 16268709 ~ 16269552 (+) True G28361
TU33490 lncRNA downstream 177371 16333451 ~ 16334652 (+) True G28402
TU33492 lncRNA downstream 180112 16336192 ~ 16336694 (+) True G28404
TU33493 lncRNA downstream 189565 16345645 ~ 16346086 (+) True G28405
TU33501 lncRNA downstream 202002 16358082 ~ 16361347 (+) True G28410
XM_026929453.2 mRNA upstream 36235 16083691 ~ 16103248 (+) False slc2a11a
XM_026929375.2 mRNA upstream 36235 16083692 ~ 16103248 (+) True slc2a11a
XM_034300566.1 mRNA upstream 36235 16084325 ~ 16103248 (+) False slc2a11a
XM_026921783.2 mRNA upstream 68443 16068404 ~ 16071040 (+) True hdhd3
XM_026925394.2 mRNA downstream 1445 16157525 ~ 16166031 (+) True zgc:172271
XM_026936003.2 mRNA downstream 10649 16166729 ~ 16171224 (+) True sirt4
XM_026931590.2 mRNA downstream 19119 16175199 ~ 16180134 (+) True rft1
XM_026925678.2 mRNA downstream 25091 16181171 ~ 16182309 (+) True mustn1a
XM_026930160.2 mRNA downstream 32255 16188335 ~ 16195260 (+) True eefsec
XR_004580083.1 other upstream 845129 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 947827 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 2638187 13498298 ~ 13501296 (+) False tshba
XR_004577010.1 other upstream 2640118 13496082 ~ 13499365 (+) False tshba
TU33403 other downstream 25238 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 2618690 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 2661322 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 3378361 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 3954050 20110130 ~ 20110225 (+) True LOC113537321

Expression Profile