RNA id: XM_034313392.1


Basic Information

Item Value
RNA id XM_034313392.1
length 2638
RNA type mRNA
GC content 0.47
exon number 11
gene id tespa1
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12422155 ~ 12432137 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAGACTCGGCGACGGAAATATAAACTCGCATTCTGAACCCACGCTAACGTGTTTTACGTGTTAAAACACGCTGACTTTGGCATGAAATAGGCTACAGGCTGTACAACGCCAGGGCGAAGCTGTTTTGCTGAGCTCTTCTGAGCGCTGCATTTCCAGTTGAGTTGCTGGCTTATTAGCAATGGACAGTCCATGTTCTGTGAACCGAAGGCAGGCATGGGCTCAATGCAGCCGCCACTGGCTCACAGTGGAAGACACAGAGCCACATGCATCTGCGTCCAGTAACGCACGTACCACTCCAGCTGCACAGCTTTCTCTGCAGGACGAAGTCTTTCCTGATGGATGCGCTACAGGAAAGATTGAAACCTGGCTCCAAAGCTGTGGAATCTTTGCTGAAGTCTGCTAACAGTTTTGAGGACGACCTGAGCCTCGGGGCTGAAGCTACAGGACTAGATGATGGATTGCATGACGAAGAGTTAGGGCACTGTCCATTGCTCCTGCCTCCTCCTAAATCACGTCGCAAAGATTTGCACACAAGcactCCTCAGCAGAGGCTTAACCTGCCATTCAGAAACATGGGCCACAGTGTTGCATCTAGTATCTTCTCCTCCACCACCAATAAAACTGCTTCCAGTGTGTCTGAGGTCCTGCAGATGTGTGCTGAGGATGCAGAGGAGACTCTGTACCAGTTAGGATTTGGTTGTGAGGAGCCACAAGTAACAGCCCGTATTCCAGCTCGTTTCTTCACTTTCCCTTCGCAGCTCAGAGGCATCAACTTCCGCCTGTTCCTTGAGTCACAGCTCCGCCGCATTCGGGAAGAGGACCCCAGCCTCTCACTCGCTAGTCGTTTCCGTCAGGTGGAGGTGTTAACAGCCATGGCCAATGCTTTCTATTCTCTCTACTCCCACGTATCTCGGACACCGCTTCAGAAGCTGGCACCCCCTGAATTCAGCTTTTCTTCTCCCACTATGGAGCGGAGCATTGGTCAGCGCTTCTTTGGCAATGTCCGCACTGAACCACGCTCTCCCGTGGAGCGTCTCAAAGACACTGTGTCCAAGATGTGCTTATACACACGTGGCTCGGACTCTGCTTCTCCAAACTGTTCTCCTCGCAAGAGGAACAGCCTACCAGATGTGGTTGAAATGATAGTAGGGAATGTGAGGGGTGAAGCGAGCCATGACCAGAGTAATGGAATGTGGATACGGGCGCAAGCAGGGGATGGCAACGTAACTCCTAAGGTGAAAGATGAAAAGGCTCTACAGCATGCTGAAGTGAAGGCTGCTGAAAAAATGAGTGACCATGAGAAAACTACAAGTGCACACAAGCAGAGGATCCAGCGGTGGTCACAGTCAGGGCAGAGAGAAGGTCCTAGAGCAAAGGGTTGCCTGTTTAAGTCACACCATGCATCTCTGGAATCTAGGCATACTCAGACTTCACGGGATACAGACTTGGATGAAGGTTCCTCCAGTTCCTCTTTGCTTCCTGACTCCTCTAAAGATCCTGCTGATACTAATGCACCAGCTCCCATTGTTGCTTATGATGAAATTTCCCCTCATGTAGTGGAGCATGTGCATAAAGCACCTTATGGGTGTCCAGAGATGCATAGTGTATCAACAGTGGGCTTATCAACCTCTGCTCATATGCACAGTCCAGACTCGTGTCCTAGGACACCTGAACTAGAGCACAAGCTAAGCATTACGGATACAAAATCATCCTCGTTCTGTGCTGGTGATGAGCTTATGGTGGAAGTACCAGTAACTTCAAAGATTTCACAAGGTGACCTTGTGTCCCTACACCCAAGCATCACACAAGGGTCACCATGTCAGATCATGGTCACTGGATGGGAGGATGATGATGACCCTATTTTACACAGAGAATCATTTGACGACTATAATTATTTCATGTACCCTGGTAGCACTGCGCAGGTGCATTCATCCCAGTCAGACCAGCAGAGGTACCTGAGCCCCAACAACCCCTCAACTAGCCAGATCAACTGCCAACTCAAGCAGGCCAACTCCTTTGAGTTGGAGGAGGTGCAGAGTGtgggagaggaggagaacacATCAGTGGAGCAGTGTAGTGCGTACACACTGTCAGTTACAGCATCTACGCATCAGAAATGTTCACCCTTGAGAGGGGACAGTTTCCAGTCAGACAGCAGTGGCTATGCTGAAGAGGACATGCAGAATTTACTCACCTCCACTAACAGAGAGATTAGCTGAAGACCAAAACCCACATGTCACACATCCTTAATTATCTATTTTAGGGTTTTAGTTCTTTTAGAAAATACAGAGGAGCTTTCTCACACAGAGCCATAAAAAGatatttgttttacttttgaGAAGTTGAAAAAGCATTACAGCTGCAGCAGAAGGCATAGATAACAGTGCTACTTGTGTAGGCTAATTTCTGTCACTTGTCTGTGATAGTCACTTGGCTGTGTGATAAACATTGCCCAACATTTGGCCATTTGAATGTACTGCAATTAAGCAGTACTGACATTACATTAACTATGCTAATGTGGTTTTTATTCTGTAAGATTGTGCAACTGCAGatgttttgaatatttattttatgttttatgataataaagtatttatttgcatatcagTGCTAATATCAGTGGAGTGGAACAGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30616 lncRNA upstream 14116 12408321 ~ 12408523 (+) True G25907
XR_004580102.1 lncRNA upstream 113139 12302924 ~ 12309500 (+) True LOC117599716
TU30592 lncRNA upstream 126597 12295611 ~ 12296042 (+) True G25886
TU30588 lncRNA upstream 129510 12292923 ~ 12293129 (+) True G25882
TU30578 lncRNA upstream 147587 12274852 ~ 12275052 (+) True G25872
TU30654 lncRNA downstream 42574 12474711 ~ 12475823 (+) True G25939
TU30618 lncRNA downstream 77502 12509639 ~ 12512658 (+) True G25909
TU30789 lncRNA downstream 296856 12728993 ~ 12730570 (+) False si:ch211-286o17.1
XR_004577066.1 lncRNA downstream 326362 12758499 ~ 12762286 (+) True LOC117595882
TU30981 lncRNA downstream 362951 12795088 ~ 12795301 (+) True G26229
XM_026926400.2 mRNA upstream 19958 12394065 ~ 12402681 (+) True LOC113533905
XM_026926200.2 mRNA upstream 36952 12364125 ~ 12385687 (+) True LOC113533827
XM_026928946.2 mRNA upstream 152832 12260323 ~ 12269807 (+) False stau1
XM_034313861.1 mRNA downstream 297306 12729443 ~ 12751277 (+) True si:ch211-286o17.1
XM_026928420.2 mRNA downstream 302514 12734651 ~ 12750607 (+) False si:ch211-286o17.1
XM_026925720.2 mRNA downstream 501521 12933658 ~ 12949604 (+) True padi2
XM_026925727.2 mRNA downstream 503306 12935443 ~ 12948621 (+) False padi2
XM_034297994.1 mRNA downstream 654803 13086940 ~ 13117556 (+) True phc2b
TU30526 other upstream 215382 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2
TU29627 other upstream 1514067 10906200 ~ 10908572 (+) True G25029
XR_003403740.2 other upstream 1668017 10754515 ~ 10754622 (+) True LOC113537259
TU29055 other upstream 2224184 10197966 ~ 10198455 (+) True G24500
TU28879 other upstream 2515468 9895245 ~ 9907171 (+) False LOC113530691
TU30617 other downstream 94033 12526170 ~ 12527491 (+) True G25908
TU31442 other downstream 833890 13266027 ~ 13331868 (+) False si:dkey-238f9.1
XR_004577014.1 other downstream 1063719 13495856 ~ 13499365 (+) False tshba
XR_004577009.1 other downstream 1063720 13495857 ~ 13499365 (+) False tshba
XR_004577011.1 other downstream 1063720 13495857 ~ 13499365 (+) False tshba

Expression Profile