RNA id: XM_026918485.2


Basic Information

Item Value
RNA id XM_026918485.2
length 4540
RNA type mRNA
GC content 0.52
exon number 10
gene id si:dkey-156n14.3
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14022253 ~ 14030692 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAATTGCGTAGTGGCTCGGCGGGATCGCGTAGGGCGGGCCTACAGCGCGCCGCTGCTACAGGGATACCAAGATGGAAATCCAGGGGCTTTCTAATGCCCAAAACACTCACTACCAACATGGCGTCCCGCTTGAGACTGGTATGTCGTCGTCGGGAACGACAACGGGGACTGTTTCTAGACAAACTTCACACGAAAACGATAACAGCTTCGGATCGCACagcgacaacaacaacaacaggccCTCGTCTGCTCCGCTTCGACTGCTGGCACAAAATGGCAGCGGTGCTCGGCTCTCTGTACAGCACAAACGGAGCGAGAGCAGCAGCACGCTGTCAGAGGACGTTCAGGCGGCTCATATTGAGCTCTGTAACCTGAACGTGATGAAGGTGAAAGAGTACGCTGATTTAGATCTGCCGCCTGACTTCGTGAGGGCCGAGCTGAAGTACGGAGAGGAGGCTGAGCCTGAGACTGAGGACGGCGTGATGCAAATGGCGCTGCCGCTCTTCGACGGGGAGGAAGACGGATACACTGCGCAGTGTGAGCAGCACCGACAACAGCACCGAGAGCCAGTGATGAGAGACACATGTCCATCTGCAAGCGACGGCACGACCGGGTCTTCCGAAGCCAAAAACCCCAAGGAGTTTTACGTTGTTTTCAACAAAGTACAGGAAGTACTCGTGTGTGAAGAGGACGGAGAAAAGAGAGCAGATTGCTCCAAACCGACTTACGGCCCATCAGAGGTCCAACACACCCCGGATTTCTCAGAATCACAAGACCGCAGTTTGACAATCAAAGCCAAATCTTGTGCCACATGCAGTGTTGACAGTTTGACAACCAGTTGTAAGCTAGTAAATGAAGCTGGTCCTGCCACAGGCGGGAAGCAGGAGGCTGAGAAGCGCTGCATGGCGCTGCGAGAGGACGGCGTTAAGAGAGCGGATGAGAAGCTGTCTGCTGTGATGACCTGTAGTGATTTAGTGTCAGTGGAGCAGGCATCAAGTCAGCTAACGGAGTGTGAAAGTAAAAGCGATGCCACTGAAATGCCGGCGGACTACGTGAATCTGGCAGGCAGCAGTAACGGAGACGCCGCCAGCGACGGGCCGCCCGAGACTTTCTCCGGCACCATCATGATCAACAACCAGAGCATCATCGTGACTATCGAGAACGGGGTTTTAACTCTGGCGGCCCCGCCGGAGGGCTACACGTACAAGGAGGACGCAGTGGTGAGTCTAAAAGAGCATTTGGGCGTGAAGGAGCACGAAGACATCGTCCTCCTGAACTACGAGGGCGGCACGAAATCTCTGGGGAAGATGGCCGAGGACGAGGGCGGCGCCGTGAGCGACTCGGAGGAGCTGACGCTGACCGATGACTGCTCCCTGTCAGAGCTAGGCCCTCTGGACAACTGTCCGTCCGTTAAACGGGAAGAAGGAACTCTGTGCGACTCTGATTCCACAGCTCAGACCCCAAGAGGTCCGACTGAAGATGATCTGCAACCCGCAAGCCTCGTCTCTCCAACCGGCTTAGTTAAGAAAGGTGTCGCGGTGTCGTACCGCTGCCCTCAGCCTGGCTGCGCATGCGCGTTCGACAGCCGCCAGAAGCTCAAGATGCACTTGGTGTTTCACGCTGAAGACCAGCGGCCCTTCAAGTGCACAGTGGAGGGCTGTGGCTGGTCCTTCACCACCTCTTACAAGCTGAAGCGGCACCTGCAATCGCATGACAAGGTGCGACCCTACGAGTGCGAGTATGAAAACTGCGGCCGCCGCTTCACCACCATCTATAACCTGAAGGCGCATGCGCGAGCGCACGAGCAGGAGGACGCGTTTGCGTGCGAACTGTGCGGAGAAAGGTTCCGCAGCGCCACGCGCCTCGCCAACCATCAGAGGACGCACTTCGAGCCCGAACGGCCACACAAGTGCGAGTTCCCAGGATGTGAGAAGGCCTTCATCACCTTCAGTGCCCTGTTCTCACACAACAGGACCCACTTCAGAGAGACAAGCCAGTTCACCTGTACATACCCAGGCTGTGACAAGCGCTATGACAAGGCCTGTCGCCTTAAAATCCATCTTCGTAgtcacacagGTGAAAGGCCATTTGTCTGTGACTCAGAATCTTGTGGCTGGACTTTCACTAGCATGTCAAAGCTGCTGCGCCACAAAAGGAAGCATGATGATGATCGGCGGTTCACCTGTCCAGAAGAAGGGTGTGGGAAGTCCTTTACCCGCGCAGAGCACCTGAAAGGCCACAGTATCACCCACCTGGGCACTAAGCCCTTTGAGTGCCCAGTAGAAGGATGTAATGCTAAGTTCTCAGCACGGAGTAGCCTATACATCCACTCTAAGAAACACCGTCAGGATGGGGTGTCTCTGAGGAGCAGGTGCCCTGTGGCAGGATGCACCAAGCACTCATCCCGCAGTAGCCTCAAGAGTCATATGCTTAAACACCACAACCTCAGCCCAGATGTGTTGAGTCAATTGGAAAACACGGTCACTCTGACGCCTAGCTGCGAGCTCACCAGTGCTGCTCAGAGCGCCACCACTCCTGGCTCTGTGGGAACGGAGCTCAGCAGCCTGGATCTCTCCTCCCTTTTTTCCAACGTTCCCTCAGGAGCATCCACTGTACCTGCAGGTCCTACCCCTCAGTCAGGCCCTGCTCCCTTCACCATGGACATGGCTCTAGCGAGCAGTGGGATTCTTACCATAGATCCAGCCTCAGTGGGCTCAGCTTTGGGAGGAGCCAAACCTGTGGACCCTCTGATTTTGACTGCAGGTGGGGATATGGGGGTACATGTCCTGGATGCAGGGGGAGGGGGTGGGGTCTTACAGCAAGCAGCACTGCAGCTGGACGATGTACAGACGGTAAATCCTGAGGCACTTGGAGCGTTAACGGCCTTGGCAATACAGAGCACCTCAGCCGCAGAGCAGCTCCAAGCCCTGAGCTCCTCCAGTGCTTTAACAGCAGAGTCACCTTCTTCCTCTCTGACCCCATCCCTtactccctccctctcctctaCTCTCTCGTCACCGCTGTCATCTCTTGCTCCATCTCTCACGTCCTCTCTTGTTCCGTCTCTGGCGTCTTCCGCAGTACCAGAGCTGCTGTCTTCCCAGGTAAAGGCTGATATGGGGGGCAGTGAAGCAGCTGTGGGGACATTACTAAGTGGAGTGGAGGGCCTGAGCCAGCCGGAGAACAGCAAGGCTCTGAGTCAGTTTGTTTTCCCTAGCCACAGCTCTTCCTACAGCGGGCAGAAAGAGACGGAGCTGCCCTCAGTTGCTTCTTGTGCTTTTATTGAGAGCAGTGGTTCCGCCCGTACAGACTACAGGGCCATCCAACTGGCAAAGCGGAAGAAGCAGAAAGGCCCTGCTGCAAGTCCATCTACTGCAGGGGCAACTCAGCGGAAGACTAAAGGGGTGAAGAGTTCCAGTGCTGCAGGGACATTGGCTTCAGGCAGTGCTCGGTTTGGAGAAGGGACTGCTTCCACCACCACAGCTGGTCTCACTATCCGAGACCCAGTCACTGGAGTACAGTATGTACAGATTCAGCTGCTGCAGGATGACCCGGCCACAGATGGAGATTTGGCTTTCCAGCTCAGTTCGCAGACCTCCAGTTCTCATTCCCAGCTAACAGTCGACTTGCCTGTCAACATCTTGCAGGAGCCTTCTGCCATGGCTGAGGATGATAATGGATCTGATAACTCTCAGTTCACTGGCAGTACCATTAACCTACAGGAcctggaataaaacactcaccTGAGAGTCAACAAGAGCGCCTAGTAGACCTACTGACagttccttttctctttcttaccTTCACAGAAGGCATCTGTTTTCAATATGTCTGCTGTCAGGGTATTTGTGTATGTCTAATAGGTGTTTTCTATGAGACGTTTCTGAACTTAGTAGTGCAGCAATTTGAATTTAAAAGCATATTTAAACAGCCTAATTCCATACTTCCAGGATAAAATGTATTTGACCAGAAGTAAAGTTATTTCATGTGCTTCATGTATTAGCTAATTTTCCTTTGTAGTGAACATGAGCTGTTATTGCTAACAGAGTACTTATGAGCCAACTCTGTGTAGTCATTAAAGTGTCAATGAACAGCAATGAGTTGTCACAtagattttaatatatattatttctttttctggaAGGCATACACTTTGACCTAGGGAACATCAGCTAATGTGACAGCTGCTTGATAAATCTGGTATATTGTCTGGTGTAAGTCTATGTTAAAGCAGCTTTATGTACTTGGATTGTGAAACAGCACAATAGGGTATAATAGATgtaagatttattattatttatgcagAAACATACCCATCAAAATAACTGTTTGTCATGAACATTGTCTTGAGTTTGTCTTCAAGTCCTGATGAGAACAGCTTTTACAATCATGAAAGGTTTTTTCCCctactgtttttgtttgcttatttttgtATGGTTTTGTATAAAACATGACGATGTACTTCTTTGTTTTGTGTATGAGAGTATGACATACAAGATTAAAAGTTGCTctacttttaataaaaactggCCATATGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31741 lncRNA upstream 148730 13873315 ~ 13873523 (+) True G26884
TU31732 lncRNA upstream 185906 13834239 ~ 13836347 (+) True G26875
TU31730 lncRNA upstream 197027 13822384 ~ 13825226 (+) True G26873
TU31688 lncRNA upstream 392787 13626481 ~ 13629466 (+) True G26848
TU31582 lncRNA upstream 524524 13490161 ~ 13497729 (+) False tshba
TU32056 lncRNA downstream 139088 14169780 ~ 14172077 (+) True G27164
TU32160 lncRNA downstream 439398 14470090 ~ 14470420 (+) True G27262
TU32167 lncRNA downstream 460088 14490780 ~ 14491136 (+) True G27269
TU32173 lncRNA downstream 465520 14496212 ~ 14496858 (+) True G27275
TU32208 lncRNA downstream 524559 14555251 ~ 14555465 (+) True G27309
XM_034311785.1 mRNA upstream 3521 13931140 ~ 14018732 (+) False LOC113533199
XM_026925269.2 mRNA upstream 4653 13931140 ~ 14017600 (+) True LOC113533199
XM_034311792.1 mRNA upstream 4653 13931140 ~ 14017600 (+) False LOC113533199
XM_026925185.2 mRNA upstream 4653 13957532 ~ 14017600 (+) False LOC113533199
XM_034311809.1 mRNA upstream 4653 13987631 ~ 14017600 (+) False LOC113533199
XM_026925360.2 mRNA downstream 18043 14048735 ~ 14058514 (+) True LOC113533298
XM_026920665.2 mRNA downstream 69515 14100207 ~ 14113930 (+) True aldh1l1
XM_026920681.2 mRNA downstream 69539 14100231 ~ 14113930 (+) False aldh1l1
XM_026920689.2 mRNA downstream 72821 14103513 ~ 14113930 (+) False aldh1l1
XM_026920673.2 mRNA downstream 72874 14103566 ~ 14113930 (+) False aldh1l1
XR_004577012.1 other upstream 520957 13498298 ~ 13501296 (+) False tshba
XR_004577009.1 other upstream 522888 13495857 ~ 13499365 (+) False tshba
trnaf-gaa_15 other downstream 1160892 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004580083.1 other downstream 1248135 15278827 ~ 15294354 (+) False fancd2
TU33403 other downstream 2150626 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 4744078 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 4786710 18817402 ~ 18817475 (+) True trnai-aau

Expression Profile