RNA id: XM_034313879.1


Basic Information

Item Value
RNA id XM_034313879.1
length 1647
RNA type mRNA
GC content 0.45
exon number 9
gene id nhej1
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5239845 ~ 5255979 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAGTAGGAGAATgcatattttgtcttttttgtacGTTTATTTCTtgagaaacagaagagagaATCTCGAATGTCCTATATAAAACCAACTTTACCGCGGAACAGATTTGCCCGAAAACATATGTTTTCATACTAACTCAGCGGGGCTTACGATTAGCTTCGTTTGTAGAACCGATATTGACGGAAATGATCCGGTCCTGGCTTACTGTGTTAGCTCGCTTTCCCTAGCCGCCCCCCGTCCGCCAGCCTAAATTTCTACCCGAGCAATGAATATCAAAAACTTCGTTTGTCCAATCAAACAACATTGTTTTATAGCGCTCCAATGTGTGTAGTCTTTCatgctgcacattcatgcaagtagcatgaaataaataagaaacataaaaataagaGACACGGAACGATTTAGTGTAGGTTGGTGTTCCACTGAGGAAAAGTACAGAGGAGGACGGAACTTTCCCCACAACGATGTGGTACAGTCCTCTGTTCAGTCCTGGTAACCATCTCGGGTGATCCTCAATATGGAGAGTACAAGACACTCTGAGGGAGCTTTGTTGGCTTTGCCATGGGTGCCTGTGAATTTTGGGGGTTCCAAGTTGTTGGCCAAAGCCTGGTTTGGTGACACAGAATATCGATTGTTGCTGAGTGACCTGAACAGTGTTTGGGAGGAGGAGATGAGCACAAACAGCATCGAGAGACGTGCACAGGTTCTAAATAAGCGTCTAAGGGCTCCAGTGCACACATTTTTTGCTCACCTGCGCTCAGTGGCCTGGCCATGTCTCTCCAGAGAGTCGTATGAACAGAGCACAACCGTACATTTCCTTCTCAAGCATAAGGGGGAAGACCTAACTGTCAGACTCAAGAGTGAGCTGGGAGATGTACCATTCTATTGGGAATTCCAGTGCACCCCTGCCTCGGTAGCAGTGGTGTCCAGAGAGCTAGTGTGTCCCTTGTTGTCTATGACTCAAGTGCTGCATAGGCATGTTGGAGAACTAACTACTTTGCTGCTCAAGAAAGATGCTGAGATACAAGACTACAAAGAGAATGGAGCTGTGCTTAGCAGAGGTAGGCTTCAGACTGAGCCATTTGAGGAGGAGACATACAGAAGGAACTTCAACCAGAGCCTTCCCAAGATGTTGCATGACGGTCTGGAGTTTGACTCTGAGCTGCAGGACCTATATGTGTCCATATGTGCTGCAAGAAACACCCAGAAACGCAAGCGTTCTAGTGAATACAGCTCTGCTTCAGTAGACAGCTTTGTCCCTGACCAGGACCAGACCAGCTGTGCACCAACAGGCATGAGGCCTGCCTCTCCTGAGTCTAATCAAAATTATACAAGGCAGCAAGTAGAAGACACACAGTATGCTGACACCAAAAAGACTGTGAGACTCTTAcctgcttctgctgctgctgctgctcctcctgtAGTTACACCTGCAGACAGGTCAGTGAACcccaagaagaagaaagcagcAGGGCTCTTTCAGTGACAGTATGGTCCAAGAGTTGGATTTTTCTCCCCTAAAATTTTCTATACAATTCAGGAAATGATTAAACTATGAATTATTAACTGTCAATTTTCTGAAACACTGTGTGATTGATTAATTTTGttgctttgtatttttaataaattgttgtAGTGCATTA

Function

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0006310 DNA recombination biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K10980 NHEJ1, XLF; non-homologous end-joining factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26126 lncRNA upstream 29728 5209865 ~ 5210117 (+) True G21903
XR_004577063.1 lncRNA upstream 321211 4917145 ~ 4918634 (+) True LOC117595874
XR_003404676.1 lncRNA upstream 326052 4911803 ~ 4913793 (+) True LOC113545969
TU25983 lncRNA upstream 337845 4879209 ~ 4902000 (+) True G21791
TU25957 lncRNA upstream 405787 4830903 ~ 4834058 (+) True G21771
TU26152 lncRNA downstream 1623 5257602 ~ 5257827 (+) True G21928
TU26199 lncRNA downstream 73916 5329895 ~ 5330285 (+) True G21973
TU26208 lncRNA downstream 78669 5334648 ~ 5334864 (+) True G21982
TU26266 lncRNA downstream 179787 5435766 ~ 5437469 (+) True G22032
TU26269 lncRNA downstream 181574 5437553 ~ 5463156 (+) True G22033
XM_026920371.2 mRNA upstream 85418 5140401 ~ 5154427 (+) True LOC113530419
XM_026920348.2 mRNA upstream 112249 5122720 ~ 5127596 (+) False wbp4
XM_026920338.2 mRNA upstream 112249 5122721 ~ 5127596 (+) True wbp4
XM_026945633.2 mRNA upstream 480200 4754266 ~ 4759645 (+) False spega
XM_026945421.2 mRNA upstream 522572 4708842 ~ 4717273 (+) True LOC113545806
XM_034313088.1 mRNA downstream 220771 5476750 ~ 5489524 (+) True chmp4ba
XM_026917112.2 mRNA downstream 220777 5476756 ~ 5489524 (+) False chmp4ba
XM_026917125.2 mRNA downstream 245673 5501652 ~ 5502394 (+) False atp5f1e
XM_034312823.1 mRNA downstream 266945 5522924 ~ 5538437 (+) False ergic3
XM_026915801.2 mRNA downstream 266946 5522925 ~ 5538437 (+) True ergic3
TU26124 other upstream 30981 5208346 ~ 5208864 (+) True G21901
TU26030 other upstream 151267 5088134 ~ 5088578 (+) True G21835
XR_004579614.1 other upstream 480200 4754266 ~ 4759645 (+) True spega
XR_003404681.1 other upstream 579722 4660009 ~ 4660123 (+) True LOC113545978
trnah-gug_1 other upstream 888097 4351677 ~ 4351748 (+) True trnah-gug_1
XR_003402786.2 other downstream 461551 5717530 ~ 5753104 (+) False rbl1
TU28587 other downstream 4194946 9450925 ~ 9454462 (+) False hmga1b
TU28588 other downstream 4194946 9450925 ~ 9454462 (+) True hmga1b
XR_004577034.1 other downstream 4335962 9591941 ~ 9596854 (+) False LOC113532547
TU28879 other downstream 4639266 9895245 ~ 9907171 (+) False LOC113530691

Expression Profile