RNA id: XM_026918775.2


Basic Information

Item Value
RNA id XM_026918775.2
length 1711
RNA type mRNA
GC content 0.39
exon number 4
gene id si:dkey-6e2.2
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5680066 ~ 5700669 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaataaagtaaagcttcacttcctgtctgttcCCGTTGGATAAAATAGGCATCCTGAAAAAATACTATTTCGTTACATTTCTTTCTGTCGTCGGAATTAAACTGTACTAATATAGATACGGGGAAACACTGATGAGGCCCAGAAAGCCTAACTGGTCTACAGAGCAAAAGCTGCTGTTGGTGCAGCTAGTGAAAGCCAGGAGAGAAGGTCTACTGACTGGCAGGCATTCTTGCCGTGAGACAGCAACCAACCGGAGATGGGCATGGGATGAGATTGCGGAGGAAATCTCCACTGCCCACCCTGATGTTCCCCGTACAGGAAAGGAGTGTGAGAGACACTGGTTTATAGAGCAAGCCAAAGCTAGAGAGGCTATGGTAACCCAAAAGTCACCCACAGAACATATCAATCCAGTGACCAATCTTGTGCTGGAAATCCTCAGACTACAGAGAAAGGATACAGAGTTTAGAGACAGGATGGAAGAAGACAGTACAAGCTGtcaagaagaggaggaggaacaaATGGAAGTGAAATATGTTCCAACTACAGTTACACCTTTTATAAACATTGAGTTGCCCCTAaatcacacaaataataatagtgaAGATAATGCTCCAGCCAGTCCCCTATGCCCACTGTCACCctctgcagaaaaaaagacCCTAGAGATATCTGTTCTTCGCCGTCAAGAACGTGTGTTACAGTTGCAGGAGGAATACTATTCCCTCAAAATAAAACATCTCAAAGCACGGATGTTGATGGACCTTTGATGGGACAGTGAGGCATGAGGAAAAACgactgttttactgttttaaaaacacaacactagGAATTCTAGGTCTAGATTTCTATTGTCATAGCTGTGGCTTCAATTATCTGTTGATTTATCAAAGGCTGATCATATGGACTACAATTCTGATTAGTCTCcagagaaacagaatgaatCCTTTAGTTGTTgtacactgtatgtgtatgcTTCATGAGAAATTGTCTGGCTCAGTAATATCCAGTGTTCAGTATTTGATATGACACCTTTTCACCAATAGATGGCAAGATAGTAATTTATTTTCTCACTTgtaatactgtatttaaaatgtggATATCCAGGCAAGCATTGTATAGACACTGCTATGATGTGCTGATCTGAGTTCTGTCTGCCTAATTAGAGCTAATAAGGTTTTGAATGTCCAACTGGTTTTAAACATAAACTTATGAGCAATATCAACTTAAAGGCAGGAGACAGAAACTGAAAGGTTGTAGAGGTATTTGTCAAAGATATCTTAAAATTCCAGGTAGGAGTCTGTAGTTTGCAGGCCAATTTTAGTGCTGCACTGacaaacactttaaaataacaacataGTAAAACtgtatgaatgtttatattCTCTGTCAGAGGGTGTGATGCTATTTCTTGTTGTTTCAGCTATAAGTGTTCCACTGCAAATCTTGTTAAATAATGGCCCTGTTCAGACCTGGTATTTCCATCCATCTCAGTTGATCTGATCATAAGTTATCAACTGAGAATGCTAActgttcacacctggtattTCCTTGTTTCGAATGTGTGTTCAGTGAACACTTGTAATTTGTTAGTTGCAGGGTGCCAAATCTGCCAAAAGCAATCCAACATCACTTCAAAATCCAACCTAAAAATACTACCCAATGCCAAATGAAAACAATTTCCaatgatattttctaaataaACCATCAGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26298 lncRNA upstream 69835 5548476 ~ 5610231 (+) True G22054
TU26287 lncRNA upstream 127095 5493722 ~ 5552971 (+) False mych
TU26261 lncRNA upstream 176835 5501645 ~ 5503231 (+) True atp5f1e
XR_004579880.1 lncRNA upstream 179158 5494925 ~ 5500908 (+) True LOC117599465
TU26276 lncRNA upstream 212585 5467266 ~ 5467481 (+) True G22036
TU26352 lncRNA downstream 59 5700728 ~ 5700976 (+) True G22097
TU26366 lncRNA downstream 8297 5708966 ~ 5709171 (+) True G22110
TU26387 lncRNA downstream 81637 5782306 ~ 5786459 (+) True G22123
TU26327 lncRNA downstream 92415 5793084 ~ 5794691 (+) True G22072
TU26390 lncRNA downstream 98434 5799103 ~ 5800012 (+) True G22126
XM_026912152.2 mRNA upstream 127092 5549840 ~ 5552974 (+) False mych
XM_034310062.1 mRNA upstream 127092 5550065 ~ 5552974 (+) True mych
XM_034312823.1 mRNA upstream 141629 5522924 ~ 5538437 (+) False ergic3
XM_026915801.2 mRNA upstream 141629 5522925 ~ 5538437 (+) True ergic3
XM_026915809.2 mRNA upstream 141629 5522925 ~ 5538437 (+) False ergic3
XM_026913686.2 mRNA downstream 16868 5717537 ~ 5756688 (+) True rbl1
XM_034298497.1 mRNA downstream 188912 5889581 ~ 5948452 (+) True ripor3
XM_026937631.2 mRNA downstream 267529 5968198 ~ 5976002 (+) True tmem74b
XM_034310334.1 mRNA downstream 336045 6036714 ~ 6049905 (+) True abraa
XM_026923429.2 mRNA downstream 336045 6036714 ~ 6049905 (+) False abraa
TU26124 other upstream 471202 5208346 ~ 5208864 (+) True G21901
TU26030 other upstream 591488 5088134 ~ 5088578 (+) True G21835
XR_004579614.1 other upstream 920421 4754266 ~ 4759645 (+) True spega
XR_003404681.1 other upstream 1019943 4660009 ~ 4660123 (+) True LOC113545978
trnah-gug_1 other upstream 1328318 4351677 ~ 4351748 (+) True trnah-gug_1
XR_003402786.2 other downstream 16861 5717530 ~ 5753104 (+) False rbl1
TU28587 other downstream 3750256 9450925 ~ 9454462 (+) False hmga1b
TU28588 other downstream 3750256 9450925 ~ 9454462 (+) True hmga1b
XR_004577034.1 other downstream 3891272 9591941 ~ 9596854 (+) False LOC113532547
TU28879 other downstream 4194576 9895245 ~ 9907171 (+) False LOC113530691

Expression Profile