RNA id: XM_026918863.2


Basic Information

Item Value
RNA id XM_026918863.2
length 3467
RNA type mRNA
GC content 0.47
exon number 19
gene id tbc1d23
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19956717 ~ 19983297 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gcatggttCCCCGCGATGGACGGACTAACATCTAGCATAAGACAAGccacaagtgtgaaaacactccAGTGCACGGCTGTGGTCGTTACGACACCGCTGTGCTACTTTACGGCTCGGTGTGACGTGGACGTCACCACAGCAATGGCGGACGCTGTAGAGGAAGTACTTCAAAGCAGCTGggACGAGGACCTAGCCGAGGCTCTGGACTCTGTAGGTGGGGATCAGGATGCTGAGAAAGATGGCATCATTCAGGTCCAAAACCTGCTGCCTCCTCAAAGAGCCAAGCTTTGGAtgATTGCTCTAAATGTAGCAGGTAAAGGAGACAGTTTGTCCTCATGGGACGGGGCTTTGGATTTACCAGAGCAGACGCTCATACACAACCGAAGCCAGCAGCTCATTGatcaGCTGGGCCTTCCTGCAGAGGAGGGGCGGGACCTAGTGGGAGATGTGGAGGCAGTGATCACTTTCTATTGTAAGTCAAGAAATGTGACGTTCACAGCTGAACTCTGCTGGCCCAACCTGCTCAAACCTCTTCTGGGCCTCCAGTTAGCCCGCAGCGACCTCTACAACTGCTTCTACGCCATCATGAATAAGTACATTCCCAGGGACTGTGTGGCAAAGGGGCGCCCGTTCCACCTGTACAGACTGCTGCTGCAGTACCACGAGCCTGAACTCTGCTCATTCCTCGACACCAAAAAGATCACACCAGACTCCTATGCCATGAACTGGTTGGGCAGTTTGTTCTCTAGCCACTGTCTTCCTGAGGTCACTCAGGCCTTGTGGCACATCTACTTCCAGCAGGCCGACCCCTTCCTCATTTTCTTCCTTATGCTCATCATTCTTGTCAATGCCAAAGACATGATTCTTTCCCAAGAAGGAGACAGTAAAGAGGAGCTCATAAAAATGCTGGAACAGTCACCTACCTTGTTGGAGGCTGAGGACATTGAAGATCTGTTTTCACTGGCACAGTATTACCAAAGCAAGACGCCCCTCTCTCTCCGAAAGgaGAACCAGAACCTGTTTGGCAGCAGTCTGGTGGCTCTGAAGGAGGAGGACATGGACCTGAGTCAGGCTCTatgtctccctgtctctgtaCCTGAGATCCTGCAGGCCAATCAGCTCCAGTCTGAGGGAGTGCGCTTCTTTGTAGTGGACTGTCGACCAGCAGAGCAGTACAACGCTGGCCACTTGTCCACCGCCTTTCACCTGGACTCTGATCTGATGTTGCACAATCCGTCCGAGTTTGCTCTGTCTGTGAAGTCTCTGCTGGAGACACAAAAGCAGTCTCTGGAGTCGGGCTCAGTGGCCAGCGGTGAACATCTGTGCTTCATGGGCAGTGGGCGTGAGGAAGAAGACATGTACATGAACATGGTTCTCGCTCACTTTCTGCAGAAAAACAAGGAGTATGTCAGCATCGCTAAAGGTGGATTTATGGcactGCAGCAGCACCTGGCAGACATTAACGTAGAAGGGCCAGACAATGTGTATGTCCATTGGATAGTCAGCACTTCAGGATCCCACAGCAGCCTCAGCTCAGCAGACGGGGAGCTGAATATCACAGGGGATGGCAAAGGCGTCAAATCCCTTGTCAACAAAATGACCTTTGCCCTTAAATCCAAGTCAGTTAatgtgaaagagaaagtgatCAGCTTTATTGAAAACACCTCAGCTCCAGTGGACAGGCATGTGAGCAGCAGTGACAGAGTGGGTAAACCCTATAGGGGCGTGAAGCCTGTCTTCAGCATCGGCGATGAGGAGGAATACGACACGGATGAGATTGACAGCTCTTCAATATCAGATGATGACCGCAAAGAGATAGTGAACATACAGACATGGATTAACAAACCAGATGTGAAGCACCACTTCCCGTGTAATGAGGTGAAAGAGACTGGACACATGTTCCCCAGCCACCTGCTAATCACAGCGACACACATGTACTGTCTGAGGGAGATCGCCTCACGGAAAGGATTTGCCTACATCCAGTCCAGACAGGCGTTAAGCTCTGTGGTGAAGATCACCTCGAAAAAGAAACATCCCGAGCTAATCACTTTCAAGTTTGGCAACAACAACTCTGCTGGAGTGGAAATTATGGCTGTAGAACGGTATTTGATCCCTAATGCTGGTGATGCCACTAAAGCCATCAAGCAGCAGATCATGAAGGTTCTGGATGCTCTGGAGAGCTCATAGAGTCGCTGTTGCTCTGAGGCTGCACTCCGGCTGTATGCAGTGAGACTGCCATGACTAACACAAGTCAGCACAACTGTGTAGAGGCAtagtctttctttcctttcatcccatttctctctctctctctctctctctctctctctctctgtgtgaacGGTTTCCTGGGACAGTACTGACATTCAGTGTTGCTGATCACATCCATGGGAGACACTCAAGATTTCAACAGAAGCCGTCATTCTGTTTAGCCTTTGGCATTTTCTTCTTGTCCCTGTCAAGAAAATCTACCCCTTTAGGTGTAAGGTTGGACTTGTCGCCTCAGTCTGGATGTCTGTCAAGCCTTAATCCTGTCGCTAATCCACTGTTTTTTATGCGAGGGACTCAAAGGCAGAGCCTGCGGTGAGATAAAGGACTCAAGCCTTGAAATGCTCAGTGTTTCATTCATCTTGTTTAATTTATGGATATTCTCATCATTCAGTCGTTCATTTAATCACTGCAGTACACTTTTGATGAGTTCTGTGCATATTTATCCGAGCAGTATTTATGCCTGCAAGTTAAGACCGCTGAATCGATGCCGTATTTATATTTGAAACTGTTGTGGAACGTAGTGGAGCACAAAAGTGATGCACAGGTGATGTTTGTCACCATGCAACATCTAACACATGCACTCTTCAGTCGTTCCCACGTATGTCACTTAAATAACTGATCTCGTAAATATAATTAACTCAGAAATGAGTCATTCCTCATGGTCTATGCTTGCAGCCTTAAAGCAGATGTGAAAGTTAAGAGAAGCAGTCTGTGGGTgagtaatatttgtatatactgtaaaactGTACCTAATGGTAGGCTCTggaaaaatttatttatgaacagACACTGAGAACGCTGACGCCACTAATAAGAGCAGCCTCACTGAGGATCATGttttgtaattataatatttgaCATTAAAGTCATGGTTTGATGTGACCAGgatgataataaaaacaaatgatacaGCAGGCCACTGTGACCCTTTATCATAACTCCTAATCAGCGTTTTGAGTGTAAACACATGGTTCTGTTTATGAACTGACTCATAGACAGAACCATGTTCTGTGACTCATAGGACAGGTGAAGAAAGAATCGACAGGTGAAGAGAGTTCACATCGCTGGTAAATTCATTAACCATTTGCTTTACAAACAAATCTCAGCTTTTCAGCTTGTATACATTTTCTGTTGAAACAACATTATTGTTCTttgtaaaattttttgttttaataaatttataagtaGCCTACAAA

Function

GO:      GO:0005097,GO:0032313

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35712 lncRNA downstream 32738 19923763 ~ 19923979 (-) True G30255
TU35701 lncRNA downstream 42766 19913653 ~ 19913951 (-) True G30246
TU35691 lncRNA downstream 69979 19885468 ~ 19886738 (-) True G30236
TU35516 lncRNA downstream 343115 19599498 ~ 19613602 (-) True G30088
TU35509 lncRNA downstream 372712 19583663 ~ 19584005 (-) True G30085
TU35735 lncRNA upstream 1378 19984675 ~ 19985919 (-) True G30270
TU35741 lncRNA upstream 29128 20012425 ~ 20014005 (-) False glmnb
TU35799 lncRNA upstream 120955 20104252 ~ 20112518 (-) True G30320
XR_004579569.1 lncRNA upstream 213923 20197220 ~ 20199516 (-) True LOC117599142
TU35898 lncRNA upstream 216236 20199533 ~ 20207732 (-) True G30412
XM_026923318.2 mRNA downstream 404024 19544152 ~ 19552693 (-) False bcl6aa
XM_026923309.2 mRNA downstream 404024 19544152 ~ 19552693 (-) True bcl6aa
XM_026924570.2 mRNA downstream 580553 19372430 ~ 19376164 (-) True im:7152348
XM_026916667.2 mRNA downstream 979780 18970308 ~ 18976937 (-) True zgc:103559
XM_034310948.1 mRNA downstream 979788 18970308 ~ 18976929 (-) False zgc:103559
XM_026921581.2 mRNA upstream 2727 19986024 ~ 19999160 (-) True tomm70a
XM_026912656.2 mRNA upstream 20062 20003359 ~ 20014094 (-) True glmnb
XM_034314524.1 mRNA upstream 42557 20025854 ~ 20032781 (-) True gfi1ab
XM_026921238.2 mRNA upstream 55653 20038950 ~ 20101162 (-) True evi5b
XM_034313306.1 mRNA upstream 56356 20039653 ~ 20101160 (-) False evi5b
trnap-cgg_1 other downstream 570204 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 576205 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 1139519 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 1140387 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 1149967 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 1480564 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 1480564 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 1480564 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 1480564 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 1480564 21463861 ~ 21531428 (-) False raver2

Expression Profile