RNA id: XM_026919148.2


Basic Information

Item Value
RNA id XM_026919148.2
length 5753
RNA type mRNA
GC content 0.47
exon number 22
gene id srgap3
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15618351 ~ 15727114 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTGAGCGCGGAGCAGGATTGTGCGCAGCGGGGCAGTGCAATGCGCTCTCACCCTCTACTGTCCGGATCCTGGGGTGCTTTCTGCAGCATGGGTGCACAAGAAGAGCGCTACCGTCTGTGCAGTCACCTTTTCTTTATATAAGCAGTGGAATTCGCGTTTCTTCTGCCACTTTGGATGGCATCCTGAGCGAGGAGGAGCCcctgtgtgcgtgcgtgcgtgcgtgtgagagtgtgtgtgcgtgtgagagtgtgtgagtgtgtgtaacagcAGAGCGCTTCATCCTCCCAGCTCCTGGGTTTAGCTCTTCAGCTAGCTAAGGGAATGAgaaagtgcaggtgtgcagaAGGGTGAGTTTCAAGCTGCACTTTGCTTTTGGACAATAGAAATTGAGatcggagagagagagagagagagagagagagagagagagagagagagagacagacagaggggcTCAGTCTAACAGGAGGGACTTAGTAATAAAGTCGAGAAAGCCGAAGAATAAGAAAAAGGCTGCAAGCTGTGACAAGGAGCAGAGAGCTTCTGTgcaacatctccacatctcACTGGATCCTACATTAAATACCTCAGGAAAACAAAATGTCATCGCAAACGAAATACAAGAAGGACAAGGAGATCATTGGGGAATATGAAACGCAAGTTAAAGAGATCCGTAATCAGCTGGTGGAGCAGTTTAAGTGTCTGGAGCAGCAGTCGGAATCTCGGATCCAGCTGCTGCAGGACCTGCAGGAGTTTTTCCGCCGCAAAGCCGAGATTCAGCTGGAGTATTCGCGCAGCCTGGAGAAACTAGCCGAGAGGTTCTCGTCCAAGATTCGCTCCTCCAGAGAACACCAGCAGTTCAAGAAAGACCAGCACCTCCTGTCTTCAGTGAACTGCTGGTACCTGGTTTTGAATCAGACCCGCAGAGAAAGCCGAGACCACGCCACACTCAACGACATCTACATCAACAATGTCATTGTCCGCCTGGCGCAGATCAGCGAGGATGTCATTCGCCTCTTTAAAAAGaGTAAAGAAATTGGCATTCAGATGCATGAAGAGTTGGTGAAAGTGACAAATGAGCTATACACGGTGATGAAGACCTACCACATGTACCACACAGAGAGCATCAGCGCCGAGAGCAAGCTGAAGGATGCTGAGAAGCAGGAGGAGAAACAGTACAGCAAGTCCGGAGACCTGAACGTCAACCTCCTGCGGCATGAGGAGCGCGCCCAGCGCCGCAGCTCTGTCAGGAAGATCgagaagatgaaggagaagAGACAAGCCAAATATTCCGAAAACAAGCTGAAATGCACAAAAGCTCGCAACGACTATTTATTGAATTTGGCAGCCACCAACGCTGTAGTGGCAAAATACTACATTCACGATGTCTCCGACATGATTGACTGCTGTGACCTTGGTTATCATGCTAGCCTGGCACGCACATTAAGGACTTATCTCTCTGCGGAGTACAACCTCGAGACTTCTCGCCATGAAGGCCTGGACCTGATCGAGAGCGCCGTGGACAACCTGGACTCCCGCAGTGACAAGCACAAGATCATGGACATGTACAACCAGGTGTTCTGTCCTCCCATGCGCTTCGAGTATCTGCCTCACATGGGAGATGAGgtgtgccAGGTGAGTGCTCAGCAGCCAGTCCAGACGGAGCTCCTGATGCGCTACCATCAGCTGCAGTCCCGCTTGGCTACACTGAAGATCGAGAACGAGGAGGTGCGCAAGACCCTGGATGCGACAATGCAGACGCTGCAGGACATGCTGACCGTGGAGGACTTTGACGTGTCTGATGCCTTCCAGCACAGCCGATCCACAGAGTCCATTAAATCAGTGGCATCTGAAGGCTACATGAGCAAACTGAACATCGCAAAGAGACGCTCCAACCAGCAAGAGACTGAGCTCTTCTACTTCACAAAATTCAAAGAGTACCTGAACGGAAGTAACCTCATCATTAAACTGCAGGCCAAGCACGACCTCCTGAAGCAGACGCTGGGGGAAGGAGAACGGGCTGAGTGTGGAACAACAAGGGGAAGAAGGAATACCCGTATTCGCCACCAGGATTCAGGTCAGCCCATTCCTCTTGTGGTGGAAAGCTGCATTCGATACATCAATCTGTACGGTCTGCAGCAGCAAGGCATATTCCGAGTTCCTGGATCTCAGGTGGAAGTCAACgatattaaaaattcatttgaGAGAGGTGAAGACCCACTTATCGATGATCAGAGTGATCATGACATAAACTCAGTGGCAGGGGTTCTGAAGTTGTACTTCAGAGGCTTGGAGAACCCACTCTTCCCTAAGGAACGCTTCCTGGACTTCATCTCCACCATTAagCTCGATTCATCCGCTGAAAGAGTCCATCACCTTCAGCAGATCATAGTCACTCTTCCACGTACCATCATGATCGTCATGAGATACCTGTTTGCATTCCTCAATCATCTGTCGCAGTACAGCGATGAGAACATGATGGATCCCTACAACCTGGCCATCTGCTTCGGCCCCACTCTGATGCCCATCCCGGACGGACAGGACCCTGTAGCCTGTCAGGCCCACGTGAATGAAGTCATCAAGACCATCATCATCCACAGTGAGGTCATCTTCCCAAGCCACCGGGAACTTGAGGGCCCCGTATATGAGAAGTGCATGACAGGAGGAGAGGAGTACTGcgaTAGCCCGCACAGTGAACCAGGCACCATTGATGAGGCGGACAACGGAACTGAGCCACACACCAGTGATGACGaGGTGGAGCAGATAGAAGCAATCGCTAAATTTGACTACGTAGGGCGCACACCGCGAGAGCTCTCCTTTAAGAAGGGAGCATCCTTGCTGCTCTACCATAGAGCATCAGAGGACTGGTGGGAAGGCAGACACAACGGAGTGGACGGTCTCATCCCTCATCAGTACATCGTAGTGCAGGATCTGGACGACGCCTTTTCTGATAATCTAAGCCAGAAGGCAGACAGTGAGGCAAGCAGTGGGCCACTGCTAGACGACAAGGCCTCGTCCAAAAATGACCTCCATTCACCGTGTGAGACAGCACCAGAGTATAACTTCAGTGCAGTGATGGGCAGGGTACGTTTGCGATCGGATGGTGCGGCTATCCCACGGCGTCGCAGTGCTACAGAGAGCCACAGTCCTCCACGTGGTTCTGACACACCTCCTCGTGCAGCTGCATGTCCCAGCAGCCCCCACAAAGCCATGCTGAGCAGCAGGAGCCGCGTGGAGAGTCCTGATAAGAGACGCCTGGGCACATTTGGCAGCGCTGGCACTATAAACTACCCTGAGAGAAAGGTTTATGGAGAAGGCCATCCTCTGAGACCGAGCACTGGCACACGCCACAGCAGCCTGGGAGACCATAAGAGCCTGGAAGCTGAGGCCTTAGCTGAGGATATAGAGAAGACGATGAGTACAGCTCTGCACGAGCTGCGTGAGCTGGAACGTCAGAACACAGCCAAGCAGGCCCCGGACGTGGTGCTGGACACACTGGAGCCACTGAAAAATCCTGTAAGCTCGGAGCCGGCCAGCCCCTCACATACCATCGCCATCCGCGACCCTGAGGCGGCTCTGAGACGTGGAAGCAGCTCCTCCTCCAGTGCTGCTGAGACCATGATGATGAGCACATTCAAACCAGCACTGTGTGCCAGGCTGCCCAGTGCCCAGCTGCGACCTCCAGCTATAAGGCCCGTACGCCCCGTGCCCTCTCAGCAGCAGCGATCCAGCAGCTCTGGCTCGTCCGGAGTGGGCAGCCCTGCCATCACCCCTACTGACAAGAGCTTTCCCAGCAGCCCCTCCTCTAACACAGCCGACAAACATGGAGGCAGCATGTAGCTCCTCCAGCAGTCAGGGTCAGGGTTGGCTCTCCGATTTGTAATTCAGCCAGCCTTAGGAAGACCGAATTGAAGGGGGAAATCtttcacaagtttttttttaattattatattaggTATAGAATTTTGAAATTCAGAATGAGCCTCAGAACACTCCAGAAGTGAGCTGTGGTTACTAAGGCAACAAGGCATATGAAGTCACGAAGTTTACTTTTATAGCACTCAGTGTGGTAAAACAtgaggtgtaaaaaaaatactggaaaataataacaGCTGTGTACCACATACAGTAGGGTCTAAAAGAGTCCACAACTAAAAACGGATTTTATCTGTGTTAGTTGGAGTACAAgtgaatacatttttacaagattacaaagaaagaaagtttgCAATTTACTGAAACCATAGCTATGATAATGCATAACACAGAGGGCCATAATAATTAAATCAAGTTTAGCTGTAACGTGTTAATAGTATATCTGTGTTAACGATTTAATTGAAATATATGGCATTCCACCtcttaaaaagaaagcaaatgGCATGCAAACTGGATATTCAGCTATATTTCAGTTCAATATGATGAACttctaaattttaaaacatgtattCTCAAATAATACATATTAACTAAGTGGATTTTTGTATTTGCTTTTAATATGTGGAGCAAGTACAAACATTTTAGAAGTGGAGTCTGTGTTTTGGACcctacagtatatattattatatagtagAAGTGTATCTGTgtgaatatacacacatacacatatatatatacccacATATATCACTATCTATATGTGTATTTAAATATAGATTATACCAACATCTTAATCAGAAATGTTCATGATAAGTCACCCTCTTAGGCCAGTCACACACAGTAGAGCAATACTAAACGAAATtgctgtttgtttctctctgcaCTGCTCGGCCAGAGGTGTTGTTATTGAGGGGGTGGAGCTCTCTCTCAGGGGAGGTCCCATATAGCCCCTCCCCTAAAACCTGACTGTTGCTCAAAGCAGCCTGTGACTCCAAGACCGCCCACATGGGTTGTTGTAAATAGAGATATACTGTACTTGAACTGGTAATGCCTTTTGTTTTGTAGTATAAGGGATGTTCAGTTAAGTAACAACATAGCCAAGTTGTAAACATATATGAGATGCAGAAACTGAAACCAATATTCATTACCAACTAATTGTAAGAAACCTGTGGTAAAGATGTAGTTTactttgtatataatttttaagtAGGTTGTTTATGTCAAACATGTATATTTAGGGACAGAACAGGCAAGAATACATGGCATTTCACAAAAACCAGTCACAACCAGCAAACAAAGATTGCATTCATAAATATGGGTACTTTGTGTTCCCTGTCTGAGCCATTACTTCTAAATATATTCCATTTTATTCTGTCTTCATcaaaaaagcatttctgaaactCATAAATTTTAAACACACTTGGACCAAGCCAGTCATTCCTATTTAACCAATCCCATCTTTTCATAAGGAGCCTTCAGGTTCTTTGGGTGCACTTGTAGAAAATGGTCCCTCAACAGGATATTCAAGGGTGCTTAGCTTCCTaaaatggttctacttggaaactCTTCTGATAGGGAAACCCTCTTTTGTACATACCAGGACAAGGGACGTGCCGAAGAACtcctaatcttttttttttttttttttttttttcccagactaCACTCATAAGGTGTAAATGTTGATTTTCTTGAATAATGTCTTAGTTAAGGAAACTGTTAACACCCGATGATTATATTCATCTTGAACGTATCCAACAAAGACATATATTATTGTAGCTATACCTTACAAGGACAATGTGTAACCATATTTTCTCAACGGTTGTAGGTGGTGCTGTAGCCTACTGAaatgtttacagaaaaatattacaagtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33196 lncRNA downstream 1603 15615025 ~ 15616748 (-) True G28173
TU32946 lncRNA downstream 114308 15503832 ~ 15504043 (-) True G27953
TU32928 lncRNA downstream 140343 15477790 ~ 15478008 (-) True G27935
TU32925 lncRNA downstream 145804 15472341 ~ 15472547 (-) True G27932
TU32884 lncRNA downstream 234261 15382914 ~ 15384090 (-) True G27904
TU33234 lncRNA upstream 59739 15786853 ~ 15788153 (-) True G28207
TU33280 lncRNA upstream 201927 15929041 ~ 15933858 (-) True G28232
TU33314 lncRNA upstream 308719 16035833 ~ 16045675 (-) True G28256
TU33316 lncRNA upstream 310869 16037983 ~ 16039793 (-) True G28258
TU33349 lncRNA upstream 395615 16122729 ~ 16122949 (-) True G28278
XM_034314047.1 mRNA downstream 49923 15505644 ~ 15568428 (-) False rad18
XM_034314051.1 mRNA downstream 49923 15505644 ~ 15568428 (-) False rad18
XM_034314053.1 mRNA downstream 49923 15511866 ~ 15568428 (-) True rad18
XM_034314042.1 mRNA downstream 49923 15525560 ~ 15568428 (-) False rad18
XM_034314036.1 mRNA downstream 123142 15462073 ~ 15495209 (-) True oxtr
XM_026929869.2 mRNA upstream 25099 15752213 ~ 15756341 (-) True cish
XM_026920628.2 mRNA upstream 35422 15762536 ~ 15775878 (-) False LOC113530515
XM_026920619.2 mRNA upstream 35422 15762536 ~ 15775877 (-) True LOC113530515
XM_026920638.2 mRNA upstream 35422 15762536 ~ 15773526 (-) False LOC113530515
XM_026920652.2 mRNA upstream 51076 15778190 ~ 15784244 (-) True wdr82
TU32920 other downstream 149122 15461950 ~ 15469229 (-) False oxtr
TU32916 other downstream 157350 15456635 ~ 15461001 (-) True G27925
TU32819 other downstream 319332 15297309 ~ 15299019 (-) True G27843
XR_003403256.2 other downstream 742361 14872948 ~ 14875990 (-) False pxmp4
TU34409 other upstream 1545841 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 1786598 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34529 other upstream 2222043 17949157 ~ 17949718 (-) True G29263
TU34546 other upstream 2343873 18070987 ~ 18072909 (-) True G29279
trnae-cuc_6 other upstream 2850110 18577224 ~ 18577295 (-) True trnae-cuc_6

Expression Profile