RNA id: XM_026919389.1


Basic Information

Item Value
RNA id XM_026919389.1
length 384
RNA type mRNA
GC content 0.49
exon number 1
gene id LOC113529833
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15158934 ~ 15159317 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGCGTACAACACTGATGGGCGTCTATCTGCTACTCCTGCTCCTTCTGCCTTTCACTTCTCTCAGTCAGAGACAGAACTACAATGCAGTAACAAATGAGAATGAGGAGGTGCGCGATAAGATGTTTGTTGATGTCTTGAGTCGCTTTGGAATTGAAAGCGCTCAACTCTCACCAAAACAGCGCCTTGAGCCACGGGGAGTGCGCACCATGCGTCCTTTGTCATCAAGCCCTAAACAAGCAATGCAGGGCTCGCGTTTTGCACTTTCCCTTGATGTACCCACCACAATTTTAAGTGTCTTGATAGACATGGCCAAAGAGCATGACATGCGGGCCAAGGCTGCAGCCAATGCCGAGCTCATGGCACGCATTGGTAAAAGGAAATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32642 lncRNA upstream 51760 15106957 ~ 15107174 (+) True G27679
XR_004577376.1 lncRNA upstream 278510 14876678 ~ 14880424 (+) True LOC117596203
XR_004579401.1 lncRNA upstream 308813 14813879 ~ 14850121 (+) True LOC117598849
TU32379 lncRNA upstream 366312 14792411 ~ 14792622 (+) True G27450
TU32212 lncRNA upstream 554388 14562217 ~ 14604546 (+) True G27311
TU32702 lncRNA downstream 117323 15276640 ~ 15278716 (+) True G27733
TU32738 lncRNA downstream 312215 15471532 ~ 15471756 (+) True G27764
TU32743 lncRNA downstream 330219 15489536 ~ 15489764 (+) True G27769
TU32973 lncRNA downstream 455707 15615024 ~ 15616714 (+) True G27979
TU33046 lncRNA downstream 615059 15774376 ~ 15775849 (+) True G28040
XM_026913770.2 mRNA upstream 8600 15144650 ~ 15150334 (+) True LOC113526373
XM_026911681.2 mRNA upstream 30675 15119491 ~ 15128259 (+) True rbm38
XM_026911575.2 mRNA upstream 41847 15109002 ~ 15117087 (+) True rae1
XM_026911506.2 mRNA upstream 42758 15109002 ~ 15116176 (+) False rae1
XM_026911392.2 mRNA upstream 54632 15064895 ~ 15104302 (+) True LOC113524957
XM_026924339.2 mRNA downstream 6744 15166061 ~ 15170136 (+) True cidec
XM_026909635.2 mRNA downstream 12484 15171801 ~ 15190025 (+) False LOC113547608
XM_026948053.2 mRNA downstream 12484 15171801 ~ 15190025 (+) False LOC113547608
XM_026948136.2 mRNA downstream 12484 15171801 ~ 15190025 (+) False LOC113547608
XM_034310428.1 mRNA downstream 16057 15175374 ~ 15190025 (+) True LOC113547608
XR_004577012.1 other upstream 1657638 13498298 ~ 13501296 (+) False tshba
XR_004577009.1 other upstream 1659569 13495857 ~ 13499365 (+) False tshba
trnaf-gaa_15 other downstream 32267 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004580083.1 other downstream 119510 15278827 ~ 15294354 (+) False fancd2
TU33403 other downstream 1022001 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 3615453 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 3658085 18817402 ~ 18817475 (+) True trnai-aau

Expression Profile