RNA id: XM_026920001.2


Basic Information

Item Value
RNA id XM_026920001.2
length 2161
RNA type mRNA
GC content 0.43
exon number 4
gene id tex264a
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 15308839 ~ 15384094 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCAGTTTTGGCAGCAGAACGCTAAGAGTCAGGGAAATATCCCAAACAGCTCTCTCCCCTGCTCCTATTAGTGCACTATATGGGCTACGGAGTGGCTTCTACACCCTAACTAGTGCACTTTATGAAAAACAAGAAGCAGTTTAGGATTCAGCCTACATTTTGCTCGAGGAAAATCGCCGAGGGTATAACGTAACCTAACCTAAGCTAACATAATATACCATAACAGTGTAGAGTGAGCTCGTGTGGTGCTTAGCAGTTCAGGATCTTTTAAAGAGCATTGCATCAGTGATCGAAGACATTTCTCCTGCTTCAGCAGAAACAATGTCTGACTTTGTGATTTTATCCTTGATCTTGTTTTTGGTCGTGTGTCTCATCTTGACCCTTGCTGGGTTCGTGTTTTACTCCGGACTGCTGTCTGAGATCGTTGTTGGGACAGGATCTCCCCCGGTGAAAAAGGTGACTATTGCGTACAAGTTTAAGACAGGATCGTACAGGGACCGCGGAGCCGCCTTCACCGAGAGCTGCAGCATCGCGCCGCAGCTCTGCTCTGTAGCTCTGTATTATGACAACCCCAATGAGACTGAAGCTGATTGTTGTCGCTATGCAGTGGGAAGTATTCTGAGCCAGGACGAAGAAAAACCCGATGAAGAGTTGCAGCGTCTGTATGAGAAATTTGGATTTCGGGTCATCTCCTTCCCAGAGGTTTCCTGTGCTGTGACTTGCTCTTTCCCTAACCAGTGCATGCTGTCCCCCATCTGTGGGGCATACAGAGTCTTCCCTGAGCTCCACAGCTACATCAGGGAAAGAGGCTTGTCTGCATACCCATTTATTGAGATCTGTAAAGGGGATCTAATCCACTACATGTGCCCACTGGAGAACCAGGACAGCTTTTTTGTGCCCGAACTCCTTGAGAAGCAAACAGAGGGAGAAGAGGAAACAGAGAATGACAAAGATGCTGATGACGTGCACACGGGTGAAGGCTGCACATCTGAGAGCGGCGTAGCAGTGATGGAGGCAGACACCGAAAGCAGCGAGATGGGGGAGAGCTCCTCGCCTGTGGTGCAGCAGAGTCCACCGCTGGATGAGAGAGATTCTCAGACGGAGGAAGGAGACCAGGGGGCCAAGGGCTCCAGTGAGTCTGTAGGAAGTGGTTCATCCTTTGAAGAACTGGACATGGACattgaggaagaggagaaggaaaGGGAAAATGCTGAGGAGGATCATGTGGTGGACAATGAGAAAAGAGGAGATAATGAAGGGGAGAGTAATGAGGGATAGATTGCGTGTGCATGTTTGAAGTAGTTAATGaatcttctttttcttgttttcgtTTCCGTTTGAGGTGCTTCTTAGTCACCTAGGCAAAGTCTTAACATATGTAATCAgaggtttaataataaatgggtgAATCTTGGCAGTTTTTATAAACACGTGGCAGTCTTACTGCAGGTCACATAAACATTATGTAatcaaacctaaaaaaaaaaaaaaaacttaaaggtATTTCCTCAGCTCACTGATTCTAGTCCAGTATCTCATAAAATATCTCATAAAAGCTGCCAGTTATTTGAAAAGGGAATCCCTGCTGATTTTTTTATCACAGTGAATCACCTGTTTCAGCATCTTTGAGGCAATAAACTAATGACACCCAGCACAAATAATGTATTTCCTTACAGTGTAATCGAAGCTTGTGCTACTGAAATAATcttggaaaaatgtaaacaaaatggaTAACTCATCTAGGGAATTCTAAATAATAATTCCAAATTATGTAACCAaacaaatatgtatttttagaGCAAATGATATGTAGACAATAATATAAGATTTGATTATTCGATTATGAACTAACTGCTTTTATTATCAGTTTATGTATGTCTGTCGAGTCAGTTGTTTTATAATGGTGTTAAAGGGAAGTAAAtgttgagtgtatgtgtgtgtatgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctcagtgaCTGTTAACTTCATCATAACTAGTTATAGCTCCATACAGAAACAGCCCTATCCTTACTGCATGTGCCAGATGTGTTTGTTGTTAACATCCTCCAAGAAAACAATGGACAAAATATggattgaaataaaataacaatatagtctcta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32702 lncRNA upstream 30123 15276640 ~ 15278716 (+) True G27733
TU32642 lncRNA upstream 201665 15106957 ~ 15107174 (+) True G27679
XR_004577376.1 lncRNA upstream 428415 14876678 ~ 14880424 (+) True LOC117596203
XR_004579401.1 lncRNA upstream 458718 14813879 ~ 14850121 (+) True LOC117598849
TU32379 lncRNA upstream 516217 14792411 ~ 14792622 (+) True G27450
TU32738 lncRNA downstream 87438 15471532 ~ 15471756 (+) True G27764
TU32743 lncRNA downstream 105442 15489536 ~ 15489764 (+) True G27769
TU32973 lncRNA downstream 230930 15615024 ~ 15616714 (+) True G27979
TU33046 lncRNA downstream 390282 15774376 ~ 15775849 (+) True G28040
TU33047 lncRNA downstream 392804 15776898 ~ 15778600 (+) True G28041
XM_034313505.1 mRNA upstream 4345 15278840 ~ 15304494 (+) False fancd2
XM_026917572.2 mRNA upstream 4345 15278842 ~ 15304494 (+) True fancd2
XM_034313514.1 mRNA upstream 4345 15291280 ~ 15304494 (+) False fancd2
XM_034313516.1 mRNA upstream 25461 15278822 ~ 15283378 (+) False fancd2
XM_026913091.2 mRNA upstream 34622 15255646 ~ 15274217 (+) True usp4
XM_026929918.2 mRNA downstream 3134 15387228 ~ 15427200 (+) True grm2a
XM_026928781.2 mRNA downstream 48176 15432270 ~ 15440328 (+) False parp3
XM_034300687.1 mRNA downstream 48800 15432894 ~ 15440328 (+) True parp3
XM_026923867.2 mRNA downstream 57126 15441220 ~ 15446170 (+) True gpr61l
XM_026919013.2 mRNA downstream 67340 15451434 ~ 15453127 (+) True LOC113529636
XR_004580083.1 other upstream 14485 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 117183 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 1807543 13498298 ~ 13501296 (+) False tshba
XR_004577011.1 other upstream 1809474 13495857 ~ 13499365 (+) False tshba
TU33403 other downstream 797224 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 3390676 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 3433308 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 4150347 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 4726036 20110130 ~ 20110225 (+) True LOC113537321

Expression Profile