RNA id: XM_026920348.2


Basic Information

Item Value
RNA id XM_026920348.2
length 2049
RNA type mRNA
GC content 0.38
exon number 8
gene id wbp4
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5122720 ~ 5127596 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGTGTTGACTCGAGACGCGAACTGTTTCAAATGATTCAGTCCGGTTTGGTTAACTGCTTCAACCACTTCACTAAAAAGAACCGGTTCAAAAGAACGATTCATTCACGAACCGGACATCACTACTTGTTTCCTCCCTATGAGTGTCGCACAATCTGAAACGTCAAATCCATGCGACAATGTTATTTAGCTAAGTAGCTAGATAAGAGAAAGTGTTTAATGGTCGCACTACGATAAATTGCGGAAATAATGGCTGACTACTGGAAATCCCAACCCAAAAAATTCTGCCAATATTGCAAGTGCTGGATTGCAGACAACAAGCCTAGTATAGAATTTCAcgagagaggaaaaaatcacaaacaaaaTGTTGAAGCCAAAATCGAAGAGATTAAAAAGAACAGCACTGACAAAGCCAAGAAGGTAGAAAAAATGTCCAAGGAGTTTGCAGCAATGGAAGAGGCTGCTATGAAAGCATACAAAGAAGACATGAAAAGACTAAAAGCAGAAGCAGAAACTCCAGTTCAGGCTCAGACAAAAGCTCAAATATTTGAGGTTGAAGATACTGCAGAACCTGACAGCAAGAGTGAATCTGATGACTGGGTGCAGGGAACAACTGACAATGGACAAATTTACTACTACAACACAACAACTGGAGagtCTACATGGGAAAAGCCATCTTTGTTCCCTCCTAAACAGGGAAGCCCATCTGAAACAAACACGGAACACGAGGTTCAACTTATGTCTCAGCCAGAATCCCTCTCTGGCAAAGAGCCTCCAAATTCCAAACAGTCCCGAGCTCCCAAAATTAGCTTCAGGaaaagaaaggaagaagtaGCAGATCTACCAGGGAATGATGAAAAAGAAACTAAAGTGGAAGATttgcaagaagaagaagatgaaacGAATGTAAAATCATCTGCACccacagaaaagaaagaacctCCTGTAAAGAAACCCAGAAAGGCAAACCCATATGGAGACTGGGAACAGATTCAGGAGGATGAGGACCCATATGAAAATGTGGATTTGCAGCTGCCACAGAAAGAAAGTGGCTGTTCTACGTCTACGTCCTCTGATGTCCCCCCAGAGCCCAAAACTAAGTTTAAGGAACGCACCATCACCTCTCTGGGAGATGAAAGTAACTTGGGAGCCATATTCAAAAAGAGGAGGGCAGAGAATGGAAAACCCAGGAGCCTTCGGCAAAGAGAGAAGGATGATTGAGAATTTGATGCCTTGGCATCAGTTCCCACAAATATTTGAATAGACTATGATCAGAACATAATTTAGACTTCTTTACTGCTCTCATCACTTGTGGAAACCTTTtagattttgtatttgttaCCAGTTTGTGGTATGTTaccagtttgtgtttttttttctcaaactgACAAGCAGAACTTCTGTAGGGATATTTGTATATTCTTTCATAATTCTTTCATCAGTTTTCTTATTCCAGTTCATGAAACCATAGTTAAGTAGTAACATGTTGAAACTACAAACATACTCATAACTGCTTTCACAGTTCCCACACAGGTTTGTACATTTCAAATGGCATATATGTCTTGGAAAgagatacatttaaaaaaaaaaaaagaatgtaacCTGTTTGTGTGTAGGTATGCTGTTTGTATGAGAtaggctgtgtttgtgtgtgcatagtaATAAAGATGTTAGCCACTACTATTGTAATAACATTCATTCTGCAGTGGCACATCATAATGTCAAATAGCTTGTAATTACACTTGTAGTGAAGGAAACAAGCATGCTTGAggcatgttaattttttttccattgatcTACTTTATCCTTTAATCTGGAGGCTAAAACCTGCAATTTTCGTCTGCATTTTAATTGTTCTGTTCTACACAAGTAGTAAACATTTCCTGAACTTACAGAATCATTAATCATTAGTATAGTTCAAGACACTTTATAACCCTGAAAGGAAAAAGCCAGCAGATTCTAAAAATGTTTGCTATTCTGTGCCTTAATAGTGGTATAAACTATTTATTGTATGGAcattgattaaaatgttttttggcTGTTCAAAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577063.1 lncRNA upstream 204086 4917145 ~ 4918634 (+) True LOC117595874
XR_003404676.1 lncRNA upstream 208927 4911803 ~ 4913793 (+) True LOC113545969
TU25983 lncRNA upstream 220720 4879209 ~ 4902000 (+) True G21791
TU25957 lncRNA upstream 288662 4830903 ~ 4834058 (+) True G21771
TU25948 lncRNA upstream 314293 4808123 ~ 4808427 (+) True G21763
TU26126 lncRNA downstream 82269 5209865 ~ 5210117 (+) True G21903
TU26152 lncRNA downstream 130006 5257602 ~ 5257827 (+) True G21928
TU26199 lncRNA downstream 202299 5329895 ~ 5330285 (+) True G21973
TU26208 lncRNA downstream 207052 5334648 ~ 5334864 (+) True G21982
TU26266 lncRNA downstream 308170 5435766 ~ 5437469 (+) True G22032
XM_026945633.2 mRNA upstream 363075 4754266 ~ 4759645 (+) False spega
XM_034310135.1 mRNA upstream 405447 4708587 ~ 4717273 (+) False LOC113545806
XM_026945421.2 mRNA upstream 405447 4708842 ~ 4717273 (+) True LOC113545806
XM_034310134.1 mRNA upstream 405447 4709039 ~ 4717273 (+) False LOC113545806
XM_026945567.2 mRNA upstream 430692 4652999 ~ 4692028 (+) True stk11ip
XM_026920371.2 mRNA downstream 12805 5140401 ~ 5154427 (+) True LOC113530419
XM_034313879.1 mRNA downstream 112249 5239845 ~ 5255979 (+) True nhej1
XM_026918678.2 mRNA downstream 112255 5239851 ~ 5255979 (+) False nhej1
XM_034313875.1 mRNA downstream 112723 5240319 ~ 5255979 (+) False nhej1
XM_034313088.1 mRNA downstream 349154 5476750 ~ 5489524 (+) True chmp4ba
TU26030 other upstream 34142 5088134 ~ 5088578 (+) True G21835
XR_004579614.1 other upstream 363075 4754266 ~ 4759645 (+) True spega
XR_003404681.1 other upstream 462597 4660009 ~ 4660123 (+) True LOC113545978
trnah-gug_1 other upstream 770972 4351677 ~ 4351748 (+) True trnah-gug_1
XR_004580256.1 other upstream 1381030 3738008 ~ 3741690 (+) False LOC113545962
TU26124 other downstream 80750 5208346 ~ 5208864 (+) True G21901
XR_003402786.2 other downstream 589934 5717530 ~ 5753104 (+) False rbl1
TU28587 other downstream 4323329 9450925 ~ 9454462 (+) False hmga1b
TU28588 other downstream 4323329 9450925 ~ 9454462 (+) True hmga1b
XR_004577034.1 other downstream 4464345 9591941 ~ 9596854 (+) False LOC113532547

Expression Profile