RNA id: XM_034311959.1


Basic Information

Item Value
RNA id XM_034311959.1
length 4245
RNA type mRNA
GC content 0.44
exon number 11
gene id lpp
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19588827 ~ 19803848 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGTCATTTGAACAGCATACGGGCCTGCCTGTGGATCCTCCTCACTAAAGCCATATTAGTTGCTGGTGACTCATCGCTGTCCATCAAAGAAAAGTCCTAACCATGTGGAGTGGCCAGAACAATGGGAGTCAGCACGGTCATGTGACTGCCAGAATGGAGACCAGTTTGCCCATGGGGACCCCAAGCATCTCGGTATCACAGCACCAAGCTCCTAAAAAGTTTGCTCCTGTCGTGGCACCCAAACCCAAGTTCAACCCGTACAAGTCTCCAGGGGACACTACACACGACATTGCAGGTGATTAccctccaccacctccacctgTAGTGGACACCAGCGGTTTGCCGTCTTCTTCGTCCTTCCCTCCACCTCCACCGATGGACGAGAGCTCCTTTGGATTTCAGATCAAAGGACCAGAGAAGACCCTGGAGGAGAGACGCTCCAGCCTGGATGCTGAGATCGACTCTTTGACCAGCATCCTGGCCGATCTGGAGAGCAGCTCACCATATAAGAGTCGCACGCCACAGAATTCTGCCACCCTACCAGCGACAAGCCCCAATGCTCCTGTTACAGGCTACAAACGCATGGTGATCCCCACCCAGCCACCTCTGACCGCCACCAAAAAGTCTACTCCCAAACCTCAGGCACCTCCATCTGCTGCTCCagcctcctctccatctccttccTCACGGCCTCAGCAACCAGTTCCTGCCTCCTACAGCACGGCCTCTACCCCCAGCCAGCCCACGTTCAGTGTGCAGGCACGAGCAGCTCAGCCTGGccctcagcagcagcatcagcagcCTGGCCGAGCCACGTATGCACAGGGGCAATACACACCGGCCCAACCTCGAGGCCCTGACTTTGCCTACGGGCCTCCACAGCCAACTTTCTCCCCATCTGGAGGGTACCATGAGCAACACTACAGTGGAGCTCCAGCCCCTGGAGGCCAGAACACTTGGAGAGCTGAACCAAGCCACCATGCTGCACTACCACACAATCAGAGCTACCAGCCTCCTGCCCCAAAGAAGACCTACATCACCGACCCTCCTGCCAGCATGGCACCTTATGGAGCAGGAGTAATGGGAGCTCAGAAGGCTCCAGGTCAGTCCGCTGCTCACCCTGAGGAAGAGTTGGACAGACTGACCAAGAAGATGCTATACGACATGAACCACCCACCATCAGAGGAATACTTCGgccGCTGTGCGAGCTGCGGGGAGAACGTGGTTGGTGAAGGCACTGGCTGCACTGCCATGGATCAGGTCTTCCATGTGGACTGCTTTGTGTGCATGACCTGCAGCTGCAAGCTGAGAGGCAAACCCTTCTATGCTGTAGACAAGAAGGCTTACTGTGAGCCGTGCTACATTAACACCTTGGAGACCTGTAACATCTGCAGTAAGCCCATCATGGAGCGGATTCTGCGGGCGACGGGCAAAGCTTACCACCCGCACTGCTTTACTTGTGTGGTGTGTCACCGGAGCCTGGATGGTATCCCTTTCACTGTGGACGCCTCCAACCACATCCACTGCATCGAGGACTTCCACAAGAAGTTTGCCCCTCGTTGCTCTGTGTGTAAAGAGCCCATAATGCCTGCTCCTGGCCAGGAGGAGACGGTGCGCATTGTGGCCCTGGACCGGGATTTCCATGTGCAGTGCTACCGCTGcgagGATTGTGGCTGTCTGCTCTCTGAGGGTGATAATCAGGGCTGTTACCCACTGGATGGTCATGTTCTCTGCAAGAACTGCAACACCAGCCGCATCCAGGCCCTCACTGCCAAGGCCACCACCGACCTCTGAGTCTattctctcctcacacacacgcgcacacacacacacacacacacacacacacacacacgtacacgcacTCATATACTCCTAACTCATCTGATACAATATGGCTGCATTTAGAAATATCCTCACGCTTAAACcttgtgcgcgcacacacacacacacacacacacacacacacacacacacagacaaacacacagttcaTAATGATCACATTGTACACGTCTGTTGCAGTCAGACTAAAAGCATTTTATCTTTGCATCTTGTACGTATGCTAatagaaaacaaacatttaatagTTGATTGAAACTTTAAGGGTACCATGAGTCGAATGATCCAGAAGGCCTTGAGAAAGGATTACCTTACGATAGTTATGATGATGAATTTCACATGATGAACTAGTACAGTGATCTGTCAGTTAGGAAACTCCTTTGCTTTATATGATTTTGTATATCTTCCATATGGCCAGGGGTCAAAGAGCAAAATGTGATGGGGACAAATATGTAGTAAATGACATTTGAGTCATCTGTGTCCCCTGACGGAGTTATTTCAGCCATAACACTTCTAAAAATCCAGCTCACTCGGTCGATGTTGAGCTTTAATATTATTCTGTGTCCTAATCGTATATGTGCTTTGTCTTTAGGAGTGAAAACAGCACCATAATCCACTTAGTCATTTAGGATTTTCTGACAATCAGTGGCCTTGCTTTCATCattcatattatatatgtaCGTATGTATACATTTGACTCACAAAAGCATGATACAAGGTGATGGGGccacacatatgtatgtatgaatacacacacacacgcacacacacacacacacacacacacacacacacctaagggaaaaaatgttcttatttCTTCATATGGCCTTATAAACTATATTAAAGGGCTTTTCTGGGTTATTATTTGGGTGAATAATATgcaaacagaatttaaaatgtacaagaTATTGAAGCTCTAGTTCCAGGTGTATAGAGGAGGTGAAGTTGAATTGTAGCTGCGTAGTTGCAACACAAATGTCAGTGCATAGCGAGACAAATACATCAAtcatacaaaaacaataggATTTGACAGTATTTCTTGAAAATCAGTAAAATCTGCGAGTCTTGGCTTCAAACGACTCCCACTGGAGCAACGTTTACATTCTTTGACgacgtgtgtatatatttacatacttaTGCAGTTCATAGAGAGGTTTATTATATGGAATAGGACTGTGAACCCAAACCTATATAACCAAAGTCTGAGTAATGCTGCAGTGCACTGCTGCTTCCTCCTATTATTCAGTATACCGCTTTTCACTTAGCACAATTATTGTATGTATATGCATATCATGAAAGAAGGCCTTTAATGCAGAGTAGTTGTTGTGCTTTTTGGTATCTTTCTGAGAAAATGAAGGCAGTATAAAGTGCCTTTTTTTGTTAGTACAGTCCATAGAATgagaaacactgaaatgaaatcagTTATGGTGTGACAATCAAACACAGAGCTTAAAATGGTATTAAAAATAACTCAATCGTAGAAGATTATAACCAgcatagtttaaaaataaagaaagaatttctTGTATGCTCTTATAAACAGCACTACGAGCATTATTTCTAATATTGTCAACTTGTGAAATGTAGTATTAGACCTAAATAGCAAAGAAAGTATTGTAatgattaggaaaaaaaaactagtgaTAGGATTAATTTCTTAGCGTTGTAAAGGAAGAATAACAATATGcaatttcctttttattattgcattgacactttatataaaataatatgcagaccttaacttttttttactcttcaggaaatatttaaatttgattaaGCAATAAGTTTTCCACACTACACCTCTCCTCCTCTGTGTGCTTTTTCTGGTCAGTTTCATCATCCTGCTCTTAAGGTGTTAAGATGTAGAGAAGTGGTTGTTCTTTACTTAGCAATGGCACAGGTGTtctctgttttctgttcttGCGCTCTTTCGCTAAAATGTAGTCCTGCTTACATgcttttattgtttctttatatttttaactaTTTTGCTTCATGAGTGAGGAAAAAACAAGGGATTTTAAGGATTAGGCATTAAGCATGTAATTGAACATTAGGGGTAAAATGTACCGTGTTGCTCAGGGTGGCCTTTGTTCAGTCAGGTATTTCTAGAATGGACCATAAATTTATGCTTAAAAGTACGAGTCCTGAATtttcttacacttttttttattttgttaaggACTCTTACTAGTGTGATTGGGGTTATTCCTGAGGAGGGGATATAACAGGAGAAAGGAAATTTGTTATTATGAATTCTTCAACAAGTTGATCAATTAGAAATCTTCATCTATGTTTTATGTCAATTTTTGATTTGTATTTGCAAGTACTCATTCCCACACTGTCTCTGTATTATTTTCTCTAGCTTTAATAAACCTTTTTGCATAAGAGTCA

Function

GO:

id name namespace
GO:0060030 dorsal convergence biological_process
GO:0005515 protein binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577276.1 lncRNA upstream 17245 19553052 ~ 19582043 (+) False LOC117596099
XR_004577277.1 lncRNA upstream 17245 19553052 ~ 19582043 (+) False LOC117596099
TU35416 lncRNA upstream 33265 19565810 ~ 19566023 (+) True G29999
TU35408 lncRNA upstream 40651 19553171 ~ 19558637 (+) True LOC117596099
TU35407 lncRNA upstream 43722 19553171 ~ 19555566 (+) False LOC117596099
TU35466 lncRNA downstream 16294 19820142 ~ 19820371 (+) True G30049
TU35679 lncRNA downstream 114297 19918145 ~ 19918368 (+) True G30224
TU35746 lncRNA downstream 215736 20019584 ~ 20019947 (+) False LOC113543059
TU35757 lncRNA downstream 233887 20037735 ~ 20039974 (+) True G30288
TU35759 lncRNA downstream 233887 20037735 ~ 20039974 (+) False G30288
XM_034310151.1 mRNA upstream 62091 19534345 ~ 19537197 (+) True smx5
XM_026918202.2 mRNA upstream 66483 19509832 ~ 19532805 (+) True inpp5d
XM_026918211.2 mRNA upstream 66483 19509833 ~ 19532805 (+) False inpp5d
XM_026929795.2 mRNA upstream 92431 19501596 ~ 19506857 (+) True gpr17
XM_034297729.1 mRNA upstream 98681 19477979 ~ 19500607 (+) True LOC113527823
XM_026921089.2 mRNA downstream 51282 19855130 ~ 19883588 (+) True tprg1
XM_034310075.1 mRNA downstream 80913 19884761 ~ 19956034 (+) True tp63
XM_034310077.1 mRNA downstream 80913 19884761 ~ 19955906 (+) False tp63
XM_034310076.1 mRNA downstream 80913 19884761 ~ 19955906 (+) False tp63
XM_034310093.1 mRNA downstream 80913 19884761 ~ 19955892 (+) False tp63
TU35395 other upstream 62274 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 772368 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 781813 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 3416985 16181318 ~ 16182303 (+) False mustn1a
XR_004580083.1 other upstream 4304934 15278827 ~ 15294354 (+) False fancd2
XR_003403752.1 other downstream 306282 20110130 ~ 20110225 (+) True LOC113537321
TU36319 other downstream 1211010 21014858 ~ 21017447 (+) False insl5a
XR_004579462.1 other downstream 2794493 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 3672103 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 4216530 24020378 ~ 24021036 (+) True G32684

Expression Profile