RNA id: XM_026920681.2


Basic Information

Item Value
RNA id XM_026920681.2
length 2852
RNA type mRNA
GC content 0.49
exon number 23
gene id aldh1l1
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14100207 ~ 14113930 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTGGCCGCTGAGAGATTGAccctaatctgattggtcgatcAGCCTGCCTGACCGGCCGCAGAAATAAATTACGACCCCTCCCATTGGAGCGCTGTCTCACACACAAGGAGGGCCTTCAAGACGTGTAAAGGATGAAGATCGCTGTGATTGGCCAGAGCCTTTTTGGACAAGAAGTGTATAAAGAGCTGAGGAAGGAGGGTCACACTATTGTTGGGGTGTTTACCATACCTGACAAAGATGGCAAGGCTGACCCACTAGGTGCTGAAGCAGAGAAAGATGGCGTGGCAGTGTTTAAGTTTCCACGCTGGCGGGTAAAGGGCAAAGCCATTGATGAGGTGGTGGCACAGTATAAAGCTGTGGGAGCTGAGCTCAACGTACTGCCCTTCTGCTCTCAGTTCATCCCGATGGAGGTGATAGACCACCCAAAGCACGGCTCCATCATCTACCACCCTTCACTGCTGCCACGCCATAGAGGGGCCTCTGCCATTAactgGACTCTTATCCATGGAGACAAAAAGGGTGGGTTTACAGTGTTTTGGGCCGATGATGGACTGGACACTGGGCCAATCCTGTTGCAGAAAGAGTGTGATGTAGAGCCTGATGACACAGTGAATACCATCTATAAGCGCTTCCTGTATCCAGAGGGAGTCAAAGGGATGGTGGAGGCAGTGAAGTTAATTGCAGAAGGTAAAGCTCCTAAAATTAAGCAGCCAGAGGAAGGAGCCACTTATGAGTGCATTCAGAAAAAGGACAATGCAAAGaTTGATTGGAACCAGCCTGCAGAAGCCATTCATAACTGGATCAGAGGAAATGATAAAGTTCCCGGAGCCTGGGCAGAGGTTGATGGAAAGAATGTGACGTTCTATGGTTCAACATTGGTGGATAATGGTTTCACAGCTAAAGGGCAACCTTTGGAGATCCCCGGAGCAAGTCAGCCAGGTCTGGTCAGCAAGAACGGCTTGATTCTGTTTGGCAACGATGGCAAGGCGctgctggtGAAGAACCTGCAGTTTGAAGATGGGAAGATGATTGCAGCTGCTCAGTATTTCAAGGCTGGATCCAGCGCTGCAGTGGAACTcacagaggaggagaagagcTTTGCTGAGCAGATGAGGGTGGTCTGGAAGAGCATTTTGACTAATGTTGAGACGATTGATGACTCCACTGACTTCTTTAAGTCAGGTGCTGCCTCTATGGATGTTGTCAGACTGGTGGAGGAGGTGAAGTTGAGGGCAAGTCAGCTGCAGCTACAGAACGAGGATGTTTACATGGCCACGACCTTTCAGGAGTTCATCCAGATGTGTGTGAGGAAGCTGAGAGGAGAGGATGCTGAGGAAGAACTTGCTGTAGACTATGTGGAGATGAATATCAACAACATGACTATCCGAATGCCCCACCAACTCTTTATAAATGGAGAGTTTGTGGATGCTGAAGGAGGAAAAACCTATAAGACAATTAACCCTACAACTGCACAGCCGATCTGTGACGTATCTCTAGCTCAGATCTCAGATGTGGAGAAAGCTGTGGCAGCCGCTAAAGAGGCTTTCGAGAATGGCGAGTGGGGCAAAATGAACCCCAGAGACAGGGGCAGACTCATCTACAAATTGGCAGATCTGATGGAACAGCATCAGGAGGAGTTGGCCACAATCGAGGCCATAGACTCAGGAGCTGTTTACACACTGGCCCTCAAAACCCATGTTGGAATGTCCATTCAGACATTTAGATACTTTGCTGGCTGGTGTGACAAgatccagGGTTGCACTATTCCAATCAATCAAGCTCGGCCCAATCGCAACCTCACCTTTACTAAGAAAGAGCCAATTGGagtATGTGGCATTGTAATTCCATGGAATTATCCTCTGATGATGCTGGCCTGGAAGACCGCAGCCTGTCTGGCAGCTGGAAACACTGTGGTACTGAAACCTGCACAGGTGACCCCATTGACCGCTGTGAAGTTTGCAGAATTGACCGCAAGGGCAGGTTTCCCTAAAGGAGTTATCAACATCCTGCCAGGATCAGGCTCTCTGGTTGGTCAACGTTTGTCAGACCACCCTGACGTGCGCAAACTGGGCTTCACTGGTTCCACTGAGATCGGCAAACAAATCATGAAGAGcTGCGCGATCAGTAATGTGAAGAAAGTTTCTCTGGAGCTGGGTGGTAAATCCCCTCTGATTATTTTCAGTGACTGTGACCTGGACAAAGCAGTCAGAATGGggatgagttcagtgttcttcaacAAGGGGGAGAACTGCATCGCTGCGGGCAGACTGTTTGTAGAAGAATCCCTGCATGATATTTTTGTGCAAAGAGTGGTtgaagaggtgaagaagatgaagattgGTGACCCTTTGGACCGTTCCACTGATCACGGTCCCCAGAACCACAAAGCTCACTTGGACAAACTGGTGGAATACTGTGAGAGAGGAGTCAAAGAGGGAGCCACACTTGTGTGTGGGGGGAAACAAGTCAACCGGCCAGGTTTTTTCTTTGAGCCCACTGTGTTCACTGATGTGCAGGACCACATGTACATCGCTATTGAGGAGTCGTTTGGCCCTGTCATGATCATCTCCAGATTTCAGAATGGTGATGTAGATGGGGTGCTGCAGAGGGCCAATGCGACAGAATATGGCTTGGCATCAGGAGTGTTCACGAGGGACATCAGTAAGGCTCTGTATGTAAGCGAGAGGCTTCAAGCTGGAACCGTGTTTGTCAACACCTACAACAAGACTGATGTGGCAGCTCCCTTCGGTGGTTTCAAGCAGTCTGGTTTCGGCAAAGATCTGGGTCAAGAGGCTCTCAATGAATATTTGAAGACGAAGGCTGTGACAATAGAATACTGATCTGTCTAGAT

Function

GO:

id name namespace
GO:0009258 10-formyltetrahydrofolate catabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0006730 one-carbon metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0032259 methylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0016742 hydroxymethyl-, formyl- and related transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0016155 formyltetrahydrofolate dehydrogenase activity molecular_function
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31779 lncRNA upstream 45541 14000931 ~ 14054690 (+) True G26921
TU31741 lncRNA upstream 226708 13873315 ~ 13873523 (+) True G26884
TU31732 lncRNA upstream 263884 13834239 ~ 13836347 (+) True G26875
TU31730 lncRNA upstream 275005 13822384 ~ 13825226 (+) True G26873
TU31688 lncRNA upstream 470765 13626481 ~ 13629466 (+) True G26848
TU32056 lncRNA downstream 55850 14169780 ~ 14172077 (+) True G27164
TU32160 lncRNA downstream 356160 14470090 ~ 14470420 (+) True G27262
TU32167 lncRNA downstream 376850 14490780 ~ 14491136 (+) True G27269
TU32173 lncRNA downstream 382282 14496212 ~ 14496858 (+) True G27275
TU32208 lncRNA downstream 441321 14555251 ~ 14555465 (+) True G27309
XM_026925360.2 mRNA upstream 41717 14048735 ~ 14058514 (+) True LOC113533298
XM_026918485.2 mRNA upstream 69539 14022253 ~ 14030692 (+) True si:dkey-156n14.3
XM_026925185.2 mRNA upstream 82631 13957532 ~ 14017600 (+) False LOC113533199
XM_034311809.1 mRNA upstream 82631 13987631 ~ 14017600 (+) False LOC113533199
XM_034311801.1 mRNA upstream 87865 13931140 ~ 14012366 (+) False LOC113533199
XM_026922220.2 mRNA downstream 4053 14117983 ~ 14129183 (+) True LOC113531458
XM_026919278.2 mRNA downstream 469397 14583327 ~ 14588319 (+) True myl9b
XM_026919289.2 mRNA downstream 469417 14583347 ~ 14588319 (+) False myl9b
XM_026918825.2 mRNA downstream 613227 14727157 ~ 14761927 (+) True quo
XM_026918833.2 mRNA downstream 613227 14727157 ~ 14761927 (+) False quo
XR_004577012.1 other upstream 598935 13498298 ~ 13501296 (+) False tshba
XR_004577009.1 other upstream 600866 13495857 ~ 13499365 (+) False tshba
trnaf-gaa_15 other downstream 1077654 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004580083.1 other downstream 1164897 15278827 ~ 15294354 (+) False fancd2
TU33403 other downstream 2067388 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 4660840 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 4703472 18817402 ~ 18817475 (+) True trnai-aau

Expression Profile