RNA id: XM_026920707.2


Basic Information

Item Value
RNA id XM_026920707.2
length 2157
RNA type mRNA
GC content 0.54
exon number 14
gene id tp63
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19884761 ~ 19956034 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATATTACTTGtgcttaatatttttgttttttattcattactaaTATTTATCATACATCTGACCTCTTCCTTCGCCTTGATCGATGTGCTTGTGCCACTTACCGATAGCTTTAAAAGGCTCAGAGAAGACTACAGTGTGGCAGTATGACATCTCCCTATGCGGCCGTACAGTTCTGCCCAGAACACGCCTTTCAACGCAGATTGCGTGAACCAGCAGCGTGTCTCTCATGGGCTGAGGGATCTTTCCTAGCCTCCATGTCTCAGAGTCCGAGCTCACAGGGAACTGACATCCTTGGGCCGGACGTCTTCAACCAGCTGCTGGAGATGCTGGACCAGTCTACGTTCCACACTGTTCAGCCCATTGAGCTTTTGAACTTCTCAGAAGGTGCAACGGGCAGCTCTCCATCCAACACCATTCAGATCAGCATGGACTGCATCACCATGCATGGCTCTGACGACCACCTCGCAtCGCAGTACACCACTCTGGGGCCCTTTAATGGCATGGATCAAAATGGCggctccacctccaccagcccCTACAACAATGAGCATGCTCAGAACAATGTGACGGCACCGTCGCCCTACGCCCAGCCTAGTTCAACCTTCGAGGCTCTGTCTCCGTCGCCCGCCATCCCCTCCAACACAGATTATGCTGGCCCTCACACCTTTGACGTGTCCTTCCAGCAGTCCAGCACAGCCAAATCAGCCACCTGGACGTACTCCACAGACCTCAAGAAGCTGTACTGTCAGATCGCTAAAACATGTCCCATTCAGATCAAAGTTCTGACCAGCCCACCTCAGGGAGCGGTCATCCGGGCAATGCCTGTCTACAAAAAAGCTGAGCATGTGACTGAGGTGGTCAAGCGATGCCCCAACCATGAGCTCAGCCGAGAATTCAATGACGGCCAAATCGCACCGCCAAGTCACCTGATCAGAGTGGAGGGCAACAGCCACGCCCAGTATGTGGAAGACTCCATTACCGGGCGCCAGAGTGTTCTGGTGCCATACGAACCCCCGCAGGTGGGAACTGAGTTCACAACCATCCTTTACAATTTCATGTGCAACTCCAGCTGCGTGGGTGGAATGAACAGACGTCCCATCCTCATCATCGTCACACTGGAAACCAGAGATGGTCAGGTTTTGGGTCGCCGGTGTTTTGAGGCTCGTATCTGCGCATGTCCAGGACGCGACCGCAAAGCAGACGAGGACAGCATCCGCAAGCAGCATGTCAGTGACGGCACAAAAAGTTCTGAGGGTACGAAACGCCCTTTCCGCCAGACTCACAGTATTCAGATATCCTCCATCAAGAAGAGAAGATCCACCGATGAGGAAGTTTTTTGTTTGCCTATTAAAGGCCGTGAAATCTATGAGATTTTGGTGAAAATCAAAGAGTCTCTGGAGCTCATGCAGTATCTCCCTCAGCACACCATAGAGTCGTacaggcagcagcagcagagcctTCTGCAGAAACAgagcCCGCTGCCTCCTCAGCCACCGTTCGGCTCCACCTCTCCTCCACACGGCAAGGTGAACAAACTGCCCTCGGTCAGCCAGCTAATCAACCCACAACAACGCAACACACTCACCCCATCCAGCATGGCCGGAGGACTCACAGACATGAACCCCATGATGAGCGCCCACATTCCCATGAACACAGATATGAGTTCACTGAGTCCCACTCATGCCCTGCAGCCGCAGTTACCCATGGTGCcctcctctcactgcacacCCCCACCGCCATACCCTGTGGACAGCAGCATCTCCAGTTTCCTGTTACGGTTGGGCTGCTCTTCCTGTCTGGACTATTTCACAGCCCAGGGCCTTACCAGCATCTACCAGATTGAAAACTACAACCTGGAGGACCTGTCCAGGTTGAAGATCCCTACCGAGTTCCAGCACGTGATCTGGAAGGGGATTATGGAGCACCGGCAGAGCATGGAGTTCTCTCCCCCTGCACACATACTGCGCTCGTCCAGCGGGGCATCCTCGGTGAGTGTGGGCTCCACGGAGGCGCGTGGTGAGCGTGTGATTGATGCCGTGCGCTTCACCCTGCGCCAGACCATCTCTTTCCCACCGCGGGACGACTGGACCGACTTTTCCTTTGACCTGGACTCGCGCCGCAACAAGCAACAGCGCATCaaggaggagggagagtga

Function

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051262 protein tetramerization biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35466 lncRNA upstream 88912 19820142 ~ 19820371 (+) True G30049
XR_004577277.1 lncRNA upstream 327240 19553052 ~ 19582043 (+) False LOC117596099
TU35746 lncRNA downstream 63678 20019584 ~ 20019947 (+) False LOC113543059
TU35757 lncRNA downstream 81829 20037735 ~ 20039974 (+) True G30288
TU35759 lncRNA downstream 81829 20037735 ~ 20039974 (+) False G30288
TU35760 lncRNA downstream 81829 20037735 ~ 20039974 (+) False G30288
TU35761 lncRNA downstream 81829 20037735 ~ 20039974 (+) False G30288
XM_026921089.2 mRNA upstream 25695 19855130 ~ 19883588 (+) True tprg1
XM_026920592.2 mRNA upstream 105435 19588827 ~ 19803848 (+) False lpp
XM_034310260.1 mRNA downstream 44140 20000046 ~ 20020226 (+) True LOC113543059
XM_034310262.1 mRNA downstream 44140 20000046 ~ 20012351 (+) False LOC113543059
XM_026941073.2 mRNA downstream 44140 20000046 ~ 20003325 (+) False LOC113543059
XM_026921295.2 mRNA downstream 148298 20104204 ~ 20112519 (+) True rpl5b
XM_026923907.2 mRNA downstream 243619 20199525 ~ 20207753 (+) True atp1b1a
TU35395 other upstream 372269 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 1082363 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 1091808 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 3726980 16181318 ~ 16182303 (+) False mustn1a
XR_004580083.1 other upstream 4614929 15278827 ~ 15294354 (+) False fancd2
XR_003403752.1 other downstream 154224 20110130 ~ 20110225 (+) True LOC113537321
TU36319 other downstream 1058952 21014858 ~ 21017447 (+) False insl5a
XR_004579462.1 other downstream 2642435 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 3520045 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 4064472 24020378 ~ 24021036 (+) True G32684

Expression Profile