RNA id: XM_026920911.2


Basic Information

Item Value
RNA id XM_026920911.2
length 2697
RNA type mRNA
GC content 0.44
exon number 11
gene id tgm2b
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14775843 ~ 14789067 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTCTAAAGGGCCAGATCCTGTGGAGCAGTATGGTACCAAGGCTGCTTTTGGTCTGAGTGATGATATTGATGATACACAGTGGAGCGCTGCAGTAACCAGTCCACCTGGGGACATTGTCTCCTTGTCCATCTGTGCTGCCCCTGATGCACCAATCGGCCACTACACTGTGACTCTGGATGGCAGGATTCAGTTTAAAATGATACTACTGTTCAACCCCTGGTGCCCCCGAGATGCAGTGTACATGAACAGTGAGGAGAATCTGAAAGAATATGTTTTGGCTCAGGATGGGATCATCTTCAGGGGCAATGCCAAATATCCCATCCCTTCAGCATGGTTTTTTGGCCAgTTTGAAGAAGGCATTCTGGATGTGTGTCTACGAATTCTGGATGTGAACCCTAAACACAAGAGGAATGCTGGGAAAGATTGTTCTGGTCGCAGAAACCCTATTTACGTCTCTCGAGTGCTTAGTGCTATGgtGAACAGTAATGACAGAGATAATGGGGTACTGGAAGGCTGCTGGAAGCAAACTTTTGAAGGTGGAGTCAGTCCCATGTCATGGAGAGGGAGTGTGGAGATTCTCAAGACTTGGAACTCCACTTCTTGTCTGCCTGTCCGCTATGGCCAGTGCTGGGTGTTTGCTGCTGTTGCCTGCACTGTGTCTCGAGCGCTGGGTATCCCCTGCAGAGTGGTAACTAACTACCTCTCAGCCCATGACACCAACAGCAACCTGGTGATTGAGCGCTATGTGGATGAAAATGGCCAGCTGCTGAACACCACCAAAGACATGATCTGGAACTACCATTGCTGGGTGGAGAGCTGGATAGCTCGTCCTGATCTGAAAGCAGGCTTTGATGGCTGGCAAGCCAGTGACCCCACACCCCAGGAGAAGAGCGAGGGAGTGTATTGCTGTGGGCCAGTCCCAGTGCAAGCCATAAAGGATGGAGAACTCATGTGTAAGTATGATGCTCCTTTTGTGTTCTCGGAGGTAAATGCAGATGTGGAGACCTTCCTGAAGTACAAAGACGGCAGCACAAGAAAGATCATCAGTACTACTGAGGTTGGCCAGAAAATCAGCACTAAGAGTGTTGGAAGTGACAAGCGAGAGGACATTACACACCTTTACAAGTACCCAGAAGGCACTGCTGAGGAACGAGAGGCATTTAAAAAAGCCAACCATCAAAACAAACTTCTGAAACAGCCAGTCAACACCGGCCTCCATGTCACCATCAAGGTCAGCACGGAGATGAAGAAGGGCTGTGACTTTGATGTCTTTGCCTTGGTTACCAACCAGACGTCAGAGTTAAAGAAGTGTCGTCTGGTGTTTGCTTCCTGTGCCATTTCTTATGATGGAGCCATTGGGCAGGAATGTGGCTTTAAAGACCTGCTCAATGTTGAGTTACAACctggaggagaGCGGAAGGTCCCACTGAGGCTGAACTACAGTAAATACTGCAATGCAATAACCCAGGACAACCTGATCCACTTGGATGCTCTACTGATAGACAACAGCACCAGGGAAGGCATTCTGGCTATGCGCACTATTGTCCTTGAAAACCCAGAGATCAAGATAAAGATCCTGGGAGAACCCAAAGAGAACCGTCAGCTGGCTGCAGAAGTTACGGTGCAGAACACACTGCCAGAGCCTTTACATGCATGCTGCTTCAGCATTGAGGGAGCCAACCTCACTGGAGGCAAGACCATCACTGAGAGtgtttcaacCAGTATTGAACCTGGACAAGAAGCCAAGGTCAAAATCTACTTTACACCCACCCATTACGGCTTGCGCAAACTGCTGGTGGATTTTAACAGTGACAAACTTGGTCCCATAAAAGGGTTCAGGAATGTTATCATCGGCAAATAAAGGCTCTTGATCCCTCCAAACTTGCTTCAGTGAAAACCAAATGAAAGAATGTTTCAAGCCTAATGTGTCATTTCTGGGCAAATGCTTAACtttgtgtttggggaaaaaaagtttgcaCCAAAAGCATTTTGGTTAGCTGTATCAAGCCAAGatacatttccattttaatcagtatttaaaTCCCAACCAGGTTTGTTTTGAATTACATGAGGCAGTCTTTTAAATACTTGAAGAAATAATGGATGTTTTGGAAgtctttaaaaaatttgttgttACAGTTTACTTGTCATAAATCAGTCCTTGTCCCTGACACACATCTTTGTCACTGCgacaaatgtttaatttgtaatcaaggctttttgtttcttatatgTTCTTACAAAAGTAAGTGCCCTATCTACATACTTTGGAGTATAAAGCAGATTGAATAATGAAGGCTGAGAAAATTCTCTTATTCAGCATGACATCAGTGAACTATATGGCCtatatatcttttatattattttttcatatgtCTATGCTGCAATGATTCTATAAACATGTTGCTATCATATAACATATAATCCCATAACTAAGTGCCTTATTCTGCAGCTTTAAATCCAGCATTATGCTTGAAGCTCTCTTTGTTCCTGACTGTAAAAGTGGGTAGGTTTATATAAGGAGGCCCAGTGCTAAAATGTGACAGTAGAACAGTATATACAAAAGATAGTATTCTAAAGTTTTcaataaaaatgcttacatctcaGTTAATGTGAATCTTTTATAGTATTGTTTAATGCATGTATTTTTCTATGAAGCAGTTACTCTCCATTAAAGTCTTATATCACTGAGAAA

Function

GO:

id name namespace
GO:0018149 peptide cross-linking biological_process
GO:0046872 metal ion binding molecular_function
GO:0003810 protein-glutamine gamma-glutamyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32212 lncRNA upstream 176612 14562217 ~ 14604546 (+) True G27311
TU32208 lncRNA upstream 225693 14555251 ~ 14555465 (+) True G27309
TU32173 lncRNA upstream 284300 14496212 ~ 14496858 (+) True G27275
TU32167 lncRNA upstream 290022 14490780 ~ 14491136 (+) True G27269
TU32160 lncRNA upstream 310738 14470090 ~ 14470420 (+) True G27262
TU32379 lncRNA downstream 3344 14792411 ~ 14792622 (+) True G27450
XR_004579401.1 lncRNA downstream 24812 14813879 ~ 14850121 (+) True LOC117598849
XR_004577376.1 lncRNA downstream 87611 14876678 ~ 14880424 (+) True LOC117596203
TU32642 lncRNA downstream 317890 15106957 ~ 15107174 (+) True G27679
TU32702 lncRNA downstream 487573 15276640 ~ 15278716 (+) True G27733
XM_026918825.2 mRNA upstream 19231 14727157 ~ 14761927 (+) True quo
XM_026918833.2 mRNA upstream 19231 14727157 ~ 14761927 (+) False quo
XM_026918841.2 mRNA upstream 19231 14727157 ~ 14761927 (+) False quo
XM_034314476.1 mRNA upstream 19231 14727157 ~ 14761927 (+) False quo
XM_034314485.1 mRNA upstream 22959 14727157 ~ 14758199 (+) False quo
XM_034313764.1 mRNA downstream 250790 15039857 ~ 15050797 (+) True thumpd3
XM_026929226.2 mRNA downstream 252528 15041595 ~ 15050797 (+) False thumpd3
XM_026929232.2 mRNA downstream 252552 15041619 ~ 15050797 (+) False thumpd3
XM_034313760.1 mRNA downstream 252618 15041685 ~ 15050797 (+) False thumpd3
XM_034313748.1 mRNA downstream 252725 15041792 ~ 15050797 (+) False thumpd3
XR_004577012.1 other upstream 1279862 13498298 ~ 13501296 (+) False tshba
XR_004577009.1 other upstream 1281793 13495857 ~ 13499365 (+) False tshba
trnaf-gaa_15 other downstream 402517 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004580083.1 other downstream 489760 15278827 ~ 15294354 (+) False fancd2
TU33403 other downstream 1392251 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 3985703 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 4028335 18817402 ~ 18817475 (+) True trnai-aau

Expression Profile