RNA id: XM_034297980.1


Basic Information

Item Value
RNA id XM_034297980.1
length 3851
RNA type mRNA
GC content 0.51
exon number 15
gene id phc2b
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13086940 ~ 13117556 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTGCTGctggactgacaggcacagaggacaGGAGGAAGAAGGAGGGGTTTCGGAGGAATGGGTGGACCGTAGTGCTACATTATGCCCATTGATTGGCTGGAATTGGGTCCCATGTGACCTTAGGAATGCTAATGCCTGGATTCCCCTCACCAACCCCCTCCTGCTGCTGTCTCTGGTTTGTGGCGAGTGTACAGCAAGAGAACAGCCCAGAAATGGTGTAGGAGagcaggagaggaggaagaaatCAAACCCAGGGAGGGACAGACAAGGCCTAAGGCTTAAGCTAAAGCTTGCATAGACTGGGCCAGCGGGGCAGTCGTGGGTCAAAGCTGAGGCGTCAGGGTGGCACCATGGAGGGCGAGCAGGGTCCTCCTGCTTCCAGTGCCAGCATGGCAAGcacctccagctcctccagtAACACTACAACTTCTACAACCAGCACCAGCAGCACGCCTagcaccaccaacaccaccaacacctccACTGtccccagcagcagcaatgccAGCACAAGCAGCAGCACTAGCAGCAGCAGACAAACTGTTTCCCAGATATCAGTATACAGTGGGATACCCGACCGACAAACTGTACAGgtGATTCAGCAGGCCTTGCACAGGCAGCCGAGCACAGCGGCTCAGTACCTGCAACAGATGTATGCAGCTCAGCAGCAGCATCTTATGCTTCAGACAGCAGCACTACAGCAGCAGCACCTCAGCACAGCTCAGCTCCAGAGTCTGGCAGCCGTGCAGCAGgCCAGTATAGCTGCTGGTAGGCAGAGCTCTACCCAGAACGGCACTTCATCCACCCAGAGTGGCTCCTCACAAACTACAattaaTTTAACAACGTCTCCTGCCACAGCTCAGTTAATAAGCCGTGCCCAGAGTGTAAACTCCTCCCCTTCCGCAATCTCTCAGCAGGCGGTGCTGCTAGGCAACGCCTCAAGCCCCACCCTCACAGCCACCCAGGCGCAGATGTACCTGCGTGCCCAGATGgcTCAGCAAAGTAATCTGGTGCATGTAGCTAGAAGTCTCGGCCGAGCTGTTCCTCTGTCCCCCCAGCTTATCCTCGCTCCTACAGCTACTGTGACTGCTCTCCAATCTGACGCCAGTGGAACAAGTAACACTCAGTCTGCGTctgcacagGTCCAGAATCTTGCCCTTCGCAGTCATCAGGGGGCGACATCCTCCTCTCAGTCCACTGGTCTGCAGGCCCTGAGCCTTAAACAGACTCCTGTCTCCATCCAGCCCACTCCACTCATCAAGACCCCTAGCCAGAGTGCCTCCAACTCAGGGACCATCACAGGGAAGGGTGGGCTCCCTGTGGTCACCACAGATGgagggaagaaaccagagagcGGAGAGACTGAGGCCAAGGCAGTGAACATGAGCCGCAGTGTGACATCTTCTCAGCCCCTTATCGCACCAACATATACCCAGATTCAACCCCAAGCCCTGATCAAGCAGCAACCACAACAGTTTGTCATTCAATCCCAAGCTCCACCCACTCCTCGAATACAGACCCAATTACTACAGACCGCCTCAATCCAGCCCCACCCACAGACTGCCGCGCTTGGCCTCCAGGGCTCCTCAGCTGGAGGACCTGTCCCCGTCCTACCTAAACCAGCAGCTCTCAGCCAGGGATCGGCTCCGAGCCAACAAGCCACCATCTTCCATTCCACAGTGAGCCAGCACTCAGGCCTGAGCCAGTCTAAAGCTCAGCCTGTCCAGCTTACAGCCATCAACCTGCAGATCCAGCCTGCACATAGCCAGGCCTCCAGACTTGCTCAGGACAGTAAGGATAAGCCCACGTCTCTGGTAATAAGAGAGATTTGCCAGCCTCTCGGTGCCCAGGTACCCACAGCTGCCCCGTCACAGGACACCAATCCTCCAGAGCCACCTAAAGCTGACACTGGGACTGCCACAGACCAAACTCAAGGCGCAGTGGAGACCCCGAGCACAGCCACCATGACACCCCGAGGAGAAAGTGAACCGGCTAACGGTGAAAACAAACCACCTCAGGCCATCGTGAAGCCCCACGTGCTCACACATGTGATTGAAGGCTTTGTCATCCAAGAGGGAGCTGAACCATTTCCAGTGGAGAGGCCTCCAGTTCAGACAGACAGCCTTAAGAAAGCAGAGAAGCCACTGCCTTCAGACTCACAGAAAACCGCACTGAACAACGTCCCCACCACCACTGACTCTGAGCCTGAGGAATCCTCACAACAAGATCCAGCAGTGAGAGATGAGGAGGAGCCAGAAGAGCCTAAGCTGACGTGTGAGTTGTGCGGCTGGGTCGACTTTGCCTACAAGTTTAAAGGCTCAAAGCGATTCTGCTCTGTGGTGTGTGCGAAAAGGTACAATGTCGGGTGCACAAAACGCATTGGGCTCTTCCACCCTGACCGTTCCAAAACCGCCAATCGGTGGAGAAGAAGGTCACACAATCGAGGTTGTAGAACTACAGAGGCAAAGAAACAGagGCTCTCTGTGTGCCAGCAGTCTCAGGGTGAGTCCGTGTCCTCTCCACTCCCCTCTCAACCCAGTCAAGGTGAGTCCAGTCCCTGCTCAGACATCTCCAGTTATGAGGAGCTACCATCTCCTCTATCTGCTGCCAGCTCCAGCCCTGTGGGGCCACCCCGAGGGCCCTCCACCTCCGATCCGGAAGACGTTCCTACACTCAGTGAGCACTTCCTGCCATGTGACCCTACCAAGTGGAATGTGCAGGAGGTGTTTGAGTTCATCCGCTCTCTGCCAGGTTGTCAGGAAATTGCGGATGAATTCCGTTCTCAAGAGATTGATGGACAGGCAATGCTGCTACTGAAGGAGGACCACTTAATGAGTGCTATGAACATCAAACTAGGTCCAGCGCTCAAGATCTTCGCCCGCATTAACATGCTCAAAGACTCATAGCCTCAGAaggcagagtgagagagtgcgTGTGGGTGTGCGAAAGTTTTATGCGTTTCTCAATGGTCATCTAAAGGTGACCtcacaaatacaaatgcactataaagtttaaaaaaacggTACCTCCTGAAGGTCAATAaatgaaaggaaacaaaaacaaagtatCTATGAAGGATGGCACAAGTACTAATGTCCGCTCACAAAGTACACAGTACCTTTGAGAATGCTGAAGAGCAGTACATCTGCACATGATGTTTAAAGACACTTTTGATACAGGGATAACAGATGGCACAAGGTCTAAACTTCCACATCCAACATATGTCTATATGTGAACAGTGTAGCCTGGATTGTACTCCCATTACAACaaaatttcagcattttatacCTTGTCCTATTTACAGCTGTATAATATTGTTGATTTCAGaagtttttatctttttgtaCATGCCTGATccttttatataattatgtgcaagtaaattattcatttttgtgtgtatgtgtgtgaaagtgtgtctAAATTAAGCCACAGAAAATTGGTGCTAAGCAGTATGGGAATAACCCAGTCACTAATTAGTCACTACATTGTGTTGTTTAGATTTTAAATCCAGATGAAAAACAGTATAACAGCTATTACAATGGGAAAGGCTTTGTGGGTATTCCTTTCCAGACACGCATTGTTATTGGGTTATACCTTTATTAGGAACCCTTTTTCATTAGCCCAAAGGACAGCCCAAGGGCTCTTCCTCAGTGAGACCTTTTTTGAGACTTTGGAAAGataaaatgttctttaacaTGTTGCaggatttcagtgtgtgttgctAGAAAGAATTGTAATAACGTCTTGTGTCTTTGTTGGGCATGCCTTGTGAAATGCCTGTATTTATCAAATGGATTTAAATTGGtaatataattttcatttttaaatgaaaaaaagttgttttgca

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31025 lncRNA upstream 178847 12855396 ~ 12908094 (+) True G26266
TU30985 lncRNA upstream 287087 12799618 ~ 12799854 (+) True G26233
TU30983 lncRNA upstream 288912 12797696 ~ 12798029 (+) True G26231
TU30981 lncRNA upstream 291640 12795088 ~ 12795301 (+) True G26229
XR_004577066.1 lncRNA upstream 324655 12758499 ~ 12762286 (+) True LOC117595882
XR_003403407.2 lncRNA downstream 234290 13351846 ~ 13374496 (+) False LOC113533310
XR_003403408.2 lncRNA downstream 234290 13351846 ~ 13373810 (+) True LOC113533310
XR_003403409.2 lncRNA downstream 234290 13351846 ~ 13373810 (+) False LOC113533310
TU31569 lncRNA downstream 317348 13434904 ~ 13517403 (+) True G26749
TU31582 lncRNA downstream 372605 13490161 ~ 13497729 (+) False tshba
XM_026925720.2 mRNA upstream 137337 12933658 ~ 12949604 (+) True padi2
XM_026925727.2 mRNA upstream 138320 12935443 ~ 12948621 (+) False padi2
XM_034313861.1 mRNA upstream 335664 12729443 ~ 12751277 (+) True si:ch211-286o17.1
XM_026928420.2 mRNA upstream 336334 12734651 ~ 12750607 (+) False si:ch211-286o17.1
XM_026918377.2 mRNA upstream 654804 12422639 ~ 12432137 (+) False tespa1
XM_026928202.2 mRNA downstream 2747 13120303 ~ 13139653 (+) False cttnbp2nla
XM_034298925.1 mRNA downstream 9664 13127220 ~ 13139653 (+) True cttnbp2nla
XM_026916713.2 mRNA downstream 29714 13147270 ~ 13156144 (+) True wnt2ba
XM_026922691.2 mRNA downstream 82496 13200052 ~ 13214563 (+) True mov10a
XM_026922698.2 mRNA downstream 82496 13200052 ~ 13214563 (+) False mov10a
TU30617 other upstream 559450 12526170 ~ 12527491 (+) True G25908
TU30526 other upstream 879684 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2
TU29627 other upstream 2178369 10906200 ~ 10908572 (+) True G25029
XR_003403740.2 other upstream 2332319 10754515 ~ 10754622 (+) True LOC113537259
TU29055 other upstream 2888486 10197966 ~ 10198455 (+) True G24500
TU31442 other downstream 148471 13266027 ~ 13331868 (+) False si:dkey-238f9.1
XR_004577014.1 other downstream 378300 13495856 ~ 13499365 (+) False tshba
XR_004577009.1 other downstream 378301 13495857 ~ 13499365 (+) False tshba
XR_004577011.1 other downstream 378301 13495857 ~ 13499365 (+) False tshba
XR_004577010.1 other downstream 378526 13496082 ~ 13499365 (+) False tshba

Expression Profile