RNA id: XM_034314773.1


Basic Information

Item Value
RNA id XM_034314773.1
length 4007
RNA type mRNA
GC content 0.44
exon number 15
gene id matn4
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 6599357 ~ 6621680 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CATTTAATCCCGAACCAGTGCCCTGCAAATTCATTGTGTGTCGTTGTTATAACTCGTGCCTGTACTCTAAATGCTAGTATAGCTTTCTGAGAAGCCTTTTCATAGTCTTCATTTTTGGGTTCATTGTGGCTCTGTTGGAAGAAGAGGGAACACTATCCAACCGCCTTAGGACCCTTCAGACCGAGTGGAACGGAGTagtgtataacagagagagagagagagagagagagagagagagagagagagagagagagtctaccTGTCCCATCTCGCCGGCTGCGTCTCATTTCTTCCCTGCACTTCGCCAAGTTAGTAGATGATACACTCATCAGACCTCTACTATAAGCGTCTTCATCGCCTGCTGTTGTGGCATTGGTGTTGAACTCCTGGCGGTGTGTGTCAACCTCTGTGTACATTTGTTTTGAGAGATAACAACCTGCACCCAGACATCAGGGCAGATTGATTACACAGCAAGCCTGAGCATCAAGTGTCCAGAATGAGacgtttgtttgtgtgtgttggtgcacTGCTGGCTTTAGCGAACATCATGGAAGCGAGGCCCAAAGCAGCTGGAAATGAAAAGTGTAAGTCTGGCCCGGTTGACCTTGTCTTCATAATTGACGGCTCGCGCAGCGTTCGGCCACACGAGTTTGAGACGATGCGCAAGTTTATGATTGACATTATCAATGAGATGGACATCAGCCCCAATGCTGCCCGTGTGGGTGTTGTTCAGTATTCCAGTCAAGTGCAGAATGTCTTTTCCCTGAAACAGTTCATTACTCATGAGGATATGGTCAAGGCCATCAAAGAGATCGTACCGCTGGCACAGGGTACCATGACAGGCCTGGCTATCCGTTATGCCATGAATGTGGCATTCTCTGCGGAGGAGGGGGCTCGGCCCAATGTGCCTCACGTAGCGGTGATCGTCACTGATGGGCGGCCTCAGGACCGCGTTGCCGAGGTAGCTGCAGCTGCTCGAGAGTCTGGGATCGAGATCTATGCTGTGGGCGTAGCCAGAGCTGACATGACATCCCTGAGAGCCATGGCATCGCCACCTTTCGAAGACCATGTCTTCCTAGTGGAGAGCTTCGATCTCATTCACCAGTTTGGGCTCCAGTTCCAAGACAAGCTATGCAAAATTGATCTTTGTGTTGAGTCTGACCATGGCTGTGATCATATCTGTGAGAGCTCTCCTGGCTCCTATCAGTGTCTCTGCCTGCCAGGTTACACTCTCCAAGATGATGGCAAGACCTGCACAGCTATTGATTTGTGTGCGGAGGAGAAGCATGACTGTGAGCAAATCTGTATCAGTTCTCCTGGGTCTTTCAACTGTGACTGCAATACAGGCTATACACTCAATGAAGATAAAAGGACCTGCACAATGATAGACTACTGTTCATTTGGAAATCATAGCTGtcagcatgagtgtgtgagcatCCTTAATGGCTTTAACTGTCACTGCAAGGAGGGATACATTCTGAATGATGACGGAAGGACCTGCACAATGATTAACTACTGTTCATTCGGAAATGATAGCTGTGAGCACAGTTGTGTGGGTGTCCTTAATGGCTTTTACTGCCAGTGCAGTGAAGGATACAAACTAAACAAGGATGAAAGGACCTGCACAATGATCGACTACTGTTCATTTGGAAATGATAGCTGTGAGCACAAGTGTGTTAGCATCCTCAGCGGCTTTTACTGTCTCTGTAATGATGGATACAAACTCAATGATGACAAGAAGACCTGTGCAATGATTGACTATTGTTCATTTGGGAATCACAGCTGTGAtcatgaatgtgtgagtgtattaAATGGATTCCATTGCCGCTGTAATGAGGGATACACTCTTCAAGGGGATGGGAAGACCTGTCAGGtggaCAACCTGTGTAATGTAGTAGAGCATGGCTGTCAGCACCAGTGTGTGAGTACACCAGGATCATACCACTGTATCTGCCCCGAGGGTCATCTTCTACAAGAAGATGGAAAGAGCTGTGGAAGCTGCAGATCAGCCAACATTGACCTGGTTCTCCTGATTGATGGCTCTAAGAGTGTACGGCCACAAAACTTTGAGCTCGTCAAGCAGTTTGTCAACCAGGTTGTCGACCAACTAGATATCTCTGCTCATGGGACACGTGTGGGTCTTGTCCAATACTCCAGCCGGGTGAGGACTGAGTTCCCATTAAATATGTACAAGAGCAAGGAAGAGATCAAGGCAGCTGTGATGAAAGTAGCCTACATGGAGAAAGGAACCATGACAGGGCTAGCACTACAGCACATGGTGCAGGAAAGCTTCTCTGAGGCTGAGGGTGCCCGCGCTGCCTCAAGAAACATACCTCGTGTTGGgctggtgtttactgatggaCGCTCTCAGGATGACATAACAGAGTGGGCCAAAAAGGCCAAGGAAGCAGGAATTACAATGTATGCTGTTGGTGTGGGCAAAGCTGTAGAGGATGAGCTGAGAGAGATTGCTTCTGAGCCAGTGGAGAAACATTTCTTCTACACCTCTGACTTCACCGCTATTAACCAGATTGCAGAGAACCTTAAACTCAATGTCTGTCCAGAGGAGAGTCAGGGTGAAATAGAAGTGAAGGACCCTTGTGCCTGTGATAGTCTTGTGGAGTTCCAGCAGGCTACCATGGTCACTCTGAACCAGCTCAACCAGAAACTGTCAGCAATGACTACACGAATGGAGCATCTGGAGAAGCAGCTGCTCAAAAGGAAATGAGATTATTAAATCACCTGCAAGACTAAGATGATGGGGATGAGCTCCTTTTGGGAGGCACTTAGTGATGGCTCCAAAACAAGTTTTACATAACCAAAGGTCTGCGGGTATAGAACATATATACTGCATTTACATTAAGAATCACTGTGCATGATACATGCTCTGGAGTCCACGCTAGATGCAGTTTTCATTGTACCCTGTTTATACCCTCCctttttttatagttattaaaaatatttatgatcaATTTTGTATCATATTAGCACTGCTCTATggtgtacattttatacattcaaCTCAATTTCAAGTTTTTATAATACTTTTTGACTTTCGTTTCTACTAAAAtgacaaatacatttaaatagaaaGTACTTAGATATAAAGACAGATggcagaaaaaaggaagaaaacaacaaaaagtgtCAAGTGTCACCACAAGCCACCATTACAGCTTCAATATGTCTTCACATAGAGTCTTTGGAACTCTACTAGAGGGATGACACTCCATCCCAAAGATACTGTATTCCCTTAATTAGTGTTTTGATAATGGTTAATAGGGTTGGCTAGAACAGTCCAAAGTCACCTATAGGTGTTCAATTGAGCTATGACCtgctgtgaaggccatagcatatgatttttatcattttcatactcatcaaccCATTCAGTGAGCCCACATGCCCTGTAGATGGGGACATTGTCAACTGGGAAGAGACCATCtccatgagggaaaaaaataggaTAAAATTGATCAGTTGggaaaaaaattcctttttaatttgtcacccatctgtatagAGATAATAAACTGATTACTGAATTGCATTAATTCTGAAGCCATCTATATTCAAGTACACTAAAATCATTTCAATATTTCTGCTTTGAAATGACCTGGTTCAGTTATAGATTACAAAATGGTTCACATACCTACAGGACCAATGACCAGTTTCACCAAGAGCTCCTTGTGAGTCTTTTTTCTACTTTCTGTCCTATATGATAATTAATGTATAGTGGCCAGCATATGGATTGAAGATGGTTAGGGAAATAATCAAGACTGAAATGGCTTTTTCAGTAGTTCACATTCTGGACTAAACAggatttcatttattacttgaACATATCTTTGTAAAACAGCTTTAGTGCAAAATATCCCATAATATTTTATAACccctgattttgatttttttaaaaagtttgatCCCTGTGCTTTTACATACTTTCTAATAACCAGTTTTGTAATGAGAATTTCTTAttgacaaaatgaaataaagatgaaACTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26932 lncRNA upstream 41356 6557791 ~ 6558001 (+) True G22621
TU26895 lncRNA upstream 97906 6501220 ~ 6501451 (+) True G22598
TU26889 lncRNA upstream 116209 6481972 ~ 6483148 (+) True G22592
TU26879 lncRNA upstream 137106 6458924 ~ 6462251 (+) True G22582
TU26848 lncRNA upstream 202167 6396973 ~ 6397190 (+) True G22554
TU27000 lncRNA downstream 1563 6623243 ~ 6623449 (+) True G22673
TU27010 lncRNA downstream 29425 6651105 ~ 6651393 (+) True G22683
TU27093 lncRNA downstream 178396 6800076 ~ 6800790 (+) True G22765
TU27263 lncRNA downstream 421895 7043575 ~ 7043782 (+) True G22931
TU27455 lncRNA downstream 704683 7326363 ~ 7370530 (+) True G23115
XM_026915872.2 mRNA upstream 294188 6247776 ~ 6305169 (+) True esyt1b
XM_026924826.2 mRNA upstream 372196 6215947 ~ 6227161 (+) True zc3h10
XM_034298585.1 mRNA upstream 372196 6218086 ~ 6227161 (+) False zc3h10
XM_026921399.2 mRNA upstream 418832 6159337 ~ 6180525 (+) False ywhaba
XM_026928070.1 mRNA downstream 14928 6636608 ~ 6637549 (+) True or134-1
XM_026914353.2 mRNA downstream 17403 6639083 ~ 6640030 (+) True LOC113526908
XM_026914339.1 mRNA downstream 32302 6653982 ~ 6654911 (+) True LOC113526899
XM_026914327.2 mRNA downstream 45258 6666938 ~ 6667705 (+) True LOC113526892
XM_034299610.1 mRNA downstream 51572 6673252 ~ 6674193 (+) True LOC117596064
XR_003402786.2 other upstream 846253 5717530 ~ 5753104 (+) False rbl1
TU26124 other upstream 1390493 5208346 ~ 5208864 (+) True G21901
TU26030 other upstream 1510779 5088134 ~ 5088578 (+) True G21835
XR_004579614.1 other upstream 1839712 4754266 ~ 4759645 (+) True spega
XR_003404681.1 other upstream 1939234 4660009 ~ 4660123 (+) True LOC113545978
TU28587 other downstream 2829245 9450925 ~ 9454462 (+) False hmga1b
TU28588 other downstream 2829245 9450925 ~ 9454462 (+) True hmga1b
XR_004577034.1 other downstream 2970261 9591941 ~ 9596854 (+) False LOC113532547
TU28879 other downstream 3273565 9895245 ~ 9907171 (+) False LOC113530691
TU29055 other downstream 3576286 10197966 ~ 10198455 (+) True G24500

Expression Profile