RNA id: XM_034313310.1


Basic Information

Item Value
RNA id XM_034313310.1
length 2495
RNA type mRNA
GC content 0.53
exon number 21
gene id evi5b
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20038950 ~ 20101198 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACAGTTGTAAGAAGTATCGAAAAGTAGCAGAGCTAAAGGAATGTTTCTCTTCTGATGGTGGCGACGGACAAAGTAGCCGGCAAGCTGAGTTCAACTCTTTCATGGGTGAAGAACTCAGTGTCGCACACGGTCAGTCAGATGGCTAGCCAGGTGGCCACTCCGTCCTCACTGCACACGGTGGTGGGATCGTCCACCGTCTCACTGTCCTCGCCAGGCCTCTCTCCCTCAACTCCGTCCTCCACCCAGCTTAGCCCGGATGAAGTGGAGCTACTCGCCAAGCTTGAGGAGCAGAACAGGTTGTTGGAAACGGACAGTAAATCCCTGCGCTCAGTGAACGGCTCTCGGAGGAACAGCGGCTCCTCGCTGGTGTCCAGCTCCTCGGCCTCTTCCAACCTCTCGCACCTGGAGGAGGACTCGTGGATCTTATGGGGGCGCATCGTCAACGAGTGGGAGGAGGTGCGcaagaaaaaggagaaacagCTGAAGGAACtggtcaggaagggcatcccgCATCACTTCCGGGCGATAGTGTGGCAGCTTCTCTGCAATGCCCAGAATCTGCCCATAAAGGACCAGTACTCAGAACTGCTGAAGATGACGTCACCCTGCGAGAAGCTGATCCGCAGAGACATCGCCCGCACATACCCCGAGCACGAGTTCTTCAAGGAGAAGGACAGCCTGGGCCAGGAGGTGCTCTTTAATGTCATGAAGGCCTACTCACTGGTGGATAGGGAAGTAGGATACTGCCAGGGGAGCGCGTTCATCGTCGGCTTGCTGCTCATGCAGatgCCAGAAGAGGAggcattctgtgtgtttgtaaagctCATGCAGGATTACCGTCTAAGGGAACTGTTCAAACCCAGCATGGCGGAATTGGGTCTCTGCATGTATCAGTTTGAAAGTATGATTCAGGAGCAGCTGCCTGAGCTGCACATTCATTTCCAGGCCCAGAGTTTCCACACCTCCATGTACGCGTCATCCTGGTTTCTTACCATCTTTCTCACCTCCTTTCCTCTCCCTGTTGCTACAAGAATCTTCGACATATTTATGTGTGAGGGTTTGGAGATAGTGTTCCGTGTCGGCCTGGCCATCCTTCAGATGAATCAAGCAGAGCTCATCCAGTTGGACATGGAGGGCATGTTACAGTACTTTCAGAAAGTCATCCCTCATCAGCTGGACAGCGGACCAGACAAAGTGATCCAGGTCGCCTATCAAGTCAAGTACAATGCCAAGAAGATGAAAAAGTTAGAGAAGGAGTACACTACTATAAAAACCAAGGAAATGGAGGAACAGGTGGAGATAAAGAGACTTCGGACAGAGAACAGGCTGCTGAAGCAGAGGATAGACACTCTGGAGAAAGAAAGTGCTTCCTTGGCAGATAGATTGATCCAGGGTCAGGTGACGCGAGCACAGGAGGCTGAGGAGAATTACCTGGTCAAGCGGGAGCTGGCCACGGTGAAACAGCAGAGCGAGGAGGCCAGCGCACAGCTCGAGCAGGCCCAAAGCACCATCAGACAGctccaacagcagcagcagcagcctgtGAAGGCGAACCCTCGCTACTCTGAAGAATCAATCCTGCAGTTGGAGAGAGAGCTGGTCCAGGCTCGACTCAAAGAGGCCGAGTCTCAGTGCGCACTCAAAGAGATGCAGGACAAAATCCTTGACATGGAGAAGAGGAACACGTCACTGCCAGATGAGAATAATGTAGTGCGTCTTCAGGAGGAGCTGATTGCTGTTAAGTTAAGGGAGGCCGAGGCTCTGACAGGCCTCAAAGAGTTGAGACAGCAAGTCCAGGATCTGGAGGAGCATtggcagAGGCACTTGGCACGTACAGCTGGCCGCTGGAAGGACAGTCCACGGAAGAACTCGGCAAATGAACTTCAGGATGAGCTAATGAGTGTGAGACTACGAGAGGCAGAGGCCCAAGCTGAGCTCCGCGAGACCAGGCAGAGACTGCTGGAACTGGAGACACagAACCAAATCCATAGCAACCAGTTGCGGCGAGCTGAGCAAGAGATGCGCAGTTTGCATGATCGTTTGCAGAGTTTGAGCACACAGAATAAAATGCTGAACTCAGAGCTGCAGGAGTCCAAACGCAAGCAGGCAGAGATTGAATGTAAGaATAAAGAGGAGGTGATGGCAGTGAGATTAAGAGAGGCCGATAACATGGCTGCCATGGCTGAACTCCAGCAGCAGATCTCTGAATTGGAGATTCAGAAGGAAGAAGGGAGAGTACAGGGGCAGCTGAACAACACGGACTCCAACCAGTACATCCGAGACCTCAAAGACCAGATAGCAGAGCTCAAGCATGAGTGTGTTtcagATCCGCTGTTTAAAAGGGCAGAGGGGCTTACCCGACCGCACCAATTTTGATAGGATCCACATCGTCAATCACTACGGAGGGGACGACGAGTCATATCAGTCCTCGGATGAAGACGGCTTGAAGCTACCGCTTAAAGTGACCCCCTGTCAAGGTGGCGGCCGCATCACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35741 lncRNA downstream 25752 20012425 ~ 20014005 (-) False glmnb
TU35735 lncRNA downstream 53838 19984675 ~ 19985919 (-) True G30270
TU35712 lncRNA downstream 115778 19923763 ~ 19923979 (-) True G30255
TU35701 lncRNA downstream 125806 19913653 ~ 19913951 (-) True G30246
TU35691 lncRNA downstream 153019 19885468 ~ 19886738 (-) True G30236
TU35799 lncRNA upstream 3054 20104252 ~ 20112518 (-) True G30320
XR_004579569.1 lncRNA upstream 96022 20197220 ~ 20199516 (-) True LOC117599142
TU35898 lncRNA upstream 98335 20199533 ~ 20207732 (-) True G30412
TU35910 lncRNA upstream 145407 20246605 ~ 20246871 (-) True G30421
TU35911 lncRNA upstream 145913 20247111 ~ 20247337 (-) True G30422
XM_034314524.1 mRNA downstream 6976 20025854 ~ 20032781 (-) True gfi1ab
XM_026912656.2 mRNA downstream 25663 20003359 ~ 20014094 (-) True glmnb
XM_026921581.2 mRNA downstream 40597 19986024 ~ 19999160 (-) True tomm70a
XM_026918863.2 mRNA downstream 56460 19956717 ~ 19983297 (-) False tbc1d23
XM_026921212.2 mRNA upstream 11747 20112945 ~ 20142257 (-) False dipk1ab
XM_026921221.2 mRNA upstream 11747 20112945 ~ 20142257 (-) True dipk1ab
XM_026921732.2 mRNA upstream 45187 20146385 ~ 20156159 (-) True zbtb11
XM_026923691.2 mRNA upstream 70930 20172128 ~ 20183294 (-) True dpt
XM_034311036.1 mRNA upstream 106557 20207755 ~ 20246008 (-) False nme7
trnap-cgg_1 other downstream 653244 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 659245 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 1222559 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 1223427 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 1233007 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 1362663 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 1362663 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 1362663 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 1362663 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 1362663 21463861 ~ 21531428 (-) False raver2

Expression Profile