Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026921295.2 |
| length | 1082 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 8 |
| gene id | rpl5b |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 20104204 ~ 20112519 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0005840 | ribosome | cellular_component |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| GO:0008097 | 5S rRNA binding | molecular_function |
| id | description |
|---|---|
| K02932 | RP-L5e, RPL5; large subunit ribosomal protein L5e |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU35757 | lncRNA | upstream | 64230 | 20037735 ~ 20039974 (+) | True | G30288 |
| TU35759 | lncRNA | upstream | 64230 | 20037735 ~ 20039974 (+) | False | G30288 |
| TU35760 | lncRNA | upstream | 64230 | 20037735 ~ 20039974 (+) | False | G30288 |
| TU35761 | lncRNA | upstream | 64230 | 20037735 ~ 20039974 (+) | False | G30288 |
| TU35765 | lncRNA | upstream | 64230 | 20037735 ~ 20039974 (+) | False | G30288 |
| TU35863 | lncRNA | downstream | 121456 | 20233975 ~ 20234772 (+) | True | G30382 |
| TU35929 | lncRNA | downstream | 221224 | 20333743 ~ 20334121 (+) | True | G30436 |
| TU35935 | lncRNA | downstream | 248071 | 20360590 ~ 20361838 (+) | True | G30442 |
| TU35938 | lncRNA | downstream | 255294 | 20367813 ~ 20368152 (+) | True | G30445 |
| TU35941 | lncRNA | downstream | 260187 | 20372706 ~ 20373062 (+) | True | G30448 |
| XM_034310260.1 | mRNA | upstream | 83978 | 20000046 ~ 20020226 (+) | True | LOC113543059 |
| XM_034310262.1 | mRNA | upstream | 91853 | 20000046 ~ 20012351 (+) | False | LOC113543059 |
| XM_026941073.2 | mRNA | upstream | 100879 | 20000046 ~ 20003325 (+) | False | LOC113543059 |
| XM_034310075.1 | mRNA | upstream | 148170 | 19884761 ~ 19956034 (+) | True | tp63 |
| XM_034310077.1 | mRNA | upstream | 148298 | 19884761 ~ 19955906 (+) | False | tp63 |
| XM_026923907.2 | mRNA | downstream | 87006 | 20199525 ~ 20207753 (+) | True | atp1b1a |
| XM_034311045.1 | mRNA | downstream | 133055 | 20245574 ~ 20249361 (+) | False | zgc:172121 |
| XM_026926725.2 | mRNA | downstream | 133462 | 20245981 ~ 20249458 (+) | True | zgc:172121 |
| XM_034311038.1 | mRNA | downstream | 146302 | 20258821 ~ 20265493 (+) | True | si:ch211-201h21.5 |
| XM_026927129.2 | mRNA | downstream | 202506 | 20315025 ~ 20324579 (+) | True | actl6a |
| TU35395 | other | upstream | 567190 | 19534441 ~ 19537014 (+) | False | smx5 |
| TU34871 | other | upstream | 1277284 | 18774770 ~ 18826920 (+) | False | G29569 |
| trnai-aau | other | upstream | 1286729 | 18817402 ~ 18817475 (+) | True | trnai-aau |
| TU33403 | other | upstream | 3921901 | 16181318 ~ 16182303 (+) | False | mustn1a |
| XR_004580083.1 | other | upstream | 4809850 | 15278827 ~ 15294354 (+) | False | fancd2 |
| TU36319 | other | downstream | 902339 | 21014858 ~ 21017447 (+) | False | insl5a |
| XR_004579462.1 | other | downstream | 2485822 | 22598341 ~ 22602338 (+) | False | tmem69 |
| trnaf-gaa_16 | other | downstream | 3363432 | 23475951 ~ 23476023 (+) | True | trnaf-gaa_16 |
| TU38551 | other | downstream | 3907859 | 24020378 ~ 24021036 (+) | True | G32684 |
| TU38758 | other | downstream | 4540471 | 24652990 ~ 24653965 (+) | False | LOC117598985 |
