RNA id: XM_026921318.2


Basic Information

Item Value
RNA id XM_026921318.2
length 2041
RNA type mRNA
GC content 0.46
exon number 14
gene id alg6
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21796560 ~ 21815679 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGATCTTCATATCATCTGGGTGGAAAGTTCTGCGTGGTTATGAGATGTAGAAGTGTGTTACCTGAGGCGTCGTTGTGCTGACGTGATGTTTCAGGAAGCGGTGGCTGCAGCGTTGAGGAAAACTTGCAAGGATTCAAAACGGTTTTAGCACTTAATGGTTGTGAACTGTAGCATTCTAAAGGCTACCAGACATGGAGAACTGGAGCCttatttcactgtgtgttttgCTTGCACTAACGGCGAGATGGGCTGTGTCTTTTAACTCTTACTCAGGCGCTGGCAAACCACCGATGTTTGGGGATTATGAAGCACAGAGGCACTGGCAGGAAGTGACGTACAATCTccctgttcaggaatgGTACTTCAACACTACAGACAATGACCTGAACTACTGGGGTCTGGATTATCCTCCACTAACAGCCTACCACAGTCTCTTATGTGCTCGTGTtgCAAAGCTGATTAATCCTGCGTGGGTGGAGTTGCGTACTTCCAGAGGTTACGAGAGTGCCTCTCATAAATTATTCATGAGGGCCACAGTTCTCTTCTcagatatactgatatacattCCAGCAGTCCTTCTGTACTGCTTCTACCTCAGCGAAGGATCCTACAGAAAGAAGGCTGCTACAGTTCTGTGTATCCTACTGTATCCAGGACTCATCCTAGTGGACTTTGGTCATTTTCAATATAACAGTGTGAGTCTGGGCTTGGCGTTGCTGGGTGTAGTGGGACTCGGTTTGGGTCGGGACCTGCTTGGGTCTCTGGCCTTCACCTTGGCTCTGAACTACAAACAGATGGAGCTGTACCATTCATTGCCTTTCTTCTGCTACCTCTTGGGCAGGTGTATTAAACAGGGCCTTCTGGGCAAAGGACTGCTTCTGTTAGTGAAGATCTCATTGACTGTGCTGGTGACTTTTGCCCTCTGCTGGTTGCCTTTCCTGTCAGACCCACAGCAGATCCTGCAGGTTCTGCATCGCTTGTTCCCAGTTGACCGTGGTTTATTCGAGgatAAAGTGGCTAACACATGGTGCAGCTTGAACGTGCTGATAAAGATCAAGACCCTGCTGTCCAGAGATACTCAGCTGCTCCTCAGttttgcTATGACTCTCCTATTCATCTTGCCTTCGTCAATTAAATTGTTGACCAAACCCACCCTGTGGCAATTTAAATTAGCTTTGGTGAACTCCTCACTGGcctttttcctcttctcctttCAAGTCCATGAGAAGTCCATCCTGCTGCCAGCCTTgCCAGTGTGCCTTCTGATGAATGAACTTCCACTAATGGCTACTTGGTTCCTGGTGGCTTCCACTTTCAGCATGCTGCCTCTTCTGCTGAAGGATGGTTTGTTCCTGCCTTACGTGGTGACCTCACTGGCCTTCCTCTACTTCAGTGTGTATCTTCTCTCAGCTCTAGAAAGAACATCAGAGGAGGAGCTCAGACTGGGCCCGTGTCACAAACTCACCCAGTACTGCCTGTCCAAACACACCTTCAGCCTGCTAATCAAGTGCACAtttggaGCCTCGATGGTGGTCATGGCTGGTCTGAGCTTCACAAGTGTGGCAATGGATCCTCCAGCTAAACTGCCAGATTTGTTCCCAGTTCTAGTTTCCGTTTTCTCCTTCTTCCAGTTCCTGGCCTTGCTGCTGTATTTCAATCTAGTCCAGCTGACTGAGCTGACCAACAAAAAGGGCCAAAAGAAGACAAACTGAAACAGTGGGTCTATTTGAAATGGGGGTAATTATGTAGAATGATGACAAAGGAAAAGGAGAATTCCTTCCATTAGGATGGATTGGGCCTAATTTAGGAAATTGAATTTCCTCTTAATAAATATCTTGAGAAAACCCCCTCTGTTTAAAATTGTGACTTGGTAGGAACGGAGGGAAAGTTTTGCCAAATTACAAAAGAATgattataaaaacatacaaagcCCTATTGCACAAGTGctgaatatattaaaaaacaacaacaactcacAAGGACCATTTGTTACcttcatttattaacaaatatttttctacacATCAATAAATGGTTTTAT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K03848 ALG6; alpha-1,3-glucosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37144 lncRNA downstream 180885 21615321 ~ 21615675 (-) True G31492
TU37138 lncRNA downstream 183738 21569856 ~ 21612822 (-) True G31486
TU37143 lncRNA downstream 187393 21607396 ~ 21609167 (-) True G31491
TU37141 lncRNA downstream 192697 21602544 ~ 21603863 (-) True G31489
TU37132 lncRNA downstream 264101 21532248 ~ 21532459 (-) True G31481
TU37369 lncRNA upstream 288519 22104198 ~ 22104411 (-) True G31681
XR_004577195.1 lncRNA upstream 314746 22130425 ~ 22132698 (-) True LOC117596032
XR_004579711.1 lncRNA upstream 357672 22173351 ~ 22175740 (-) True LOC117599244
XR_004579710.1 lncRNA upstream 380915 22196594 ~ 22197668 (-) True LOC117599242
TU37433 lncRNA upstream 408706 22224385 ~ 22226660 (-) True G31742
XM_026928315.2 mRNA downstream 18610 21764915 ~ 21777950 (-) True pgm1
XM_026922851.2 mRNA downstream 40473 21634567 ~ 21756087 (-) True ror1
XM_034298204.1 mRNA downstream 217481 21538999 ~ 21579079 (-) True cachd1
XM_026919886.2 mRNA downstream 265133 21449546 ~ 21531427 (-) True raver2
XM_026930493.2 mRNA downstream 395632 21386910 ~ 21400928 (-) True ak4
XM_026923416.2 mRNA upstream 7063 21822742 ~ 21825474 (-) True foxd3
XM_026927983.2 mRNA upstream 141856 21957535 ~ 21968209 (-) True atg4c
XM_026916652.2 mRNA upstream 178016 21993695 ~ 21996721 (-) True angptl3
XM_026916634.2 mRNA upstream 219534 22035213 ~ 22046458 (-) True usp1
XM_026916626.2 mRNA upstream 219534 22035213 ~ 22046196 (-) False usp1
XR_004580163.1 other downstream 265132 21463861 ~ 21531428 (-) False raver2
XR_003403848.2 other upstream 1800478 23616157 ~ 23632013 (-) False uap1
XR_004577321.1 other upstream 4085051 25900730 ~ 25907994 (-) False LOC113538393
XR_003403851.2 other upstream 4265470 26081149 ~ 26105456 (-) False slc19a1
TU39875 other upstream 4815150 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 4824154 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile