RNA id: XM_026921581.2


Basic Information

Item Value
RNA id XM_026921581.2
length 3046
RNA type mRNA
GC content 0.47
exon number 12
gene id tomm70a
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 19986024 ~ 19999160 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCCAGTATCCCACAATGCCTTCGTTCCTTCTCTGACCTCTCGGCGATTTCCGTCGCCTGCTAaagtcggtgtgtgtgtgtgggtttgtgtgtgtgtgtgagtgtgtgttgcgtgGAGGGACCGATGGCCGCTTCAAAGCCCATCGAGCCTGGGGCCGGGTCCGGACTGCCCCGGTGGCAGCTGGCGCTGCTGGTCGGGACTCCCATCGTGCTCGGGGTCGGAGCCGCGTACCTGTGGAGCCGGAGCCGGGGCAGGAGCACGAGCCGGGGCAAAGAGCAGCCGAGTGAGCGCAATGAGGAGAGGAAAACTCCCGAAGGCAGCGAGCAGGACAACATGAGCCCTCTGGATAAGGCACAGGCTGCTAAGAACAGGGGGAACAAGTATTTCAAGGCTGGCAAGTACGAGCAGGCCATCCAGTGCTACACCGAGGCCATCACCGTGTGCCCCAAAGAACAGAAGAGTGACCTGTCCACCTTCTACCAGAACAGAGCTGCAGCATACGAGCAGCAGGCGAAATGGACTGAAGTGGTGGAGGACTGTTCTCAGGCCGTCGAAATGAACCCCCGCTACATCAAAGCTCTCTTTAGGCGTGCCAGAGCCCTGGAAAGACTAGACAACAAAAAGGAGTGTCTGGAAGATGTGACAGCTGTATGTATACTCGAGGCCTTCCAGAACCAGCAAAGCATGCTACTGGCAGACAAAGTGCTGAAACAGCTGGGAAAAGAGAAAGCCAAGGAAAAATACAAGAACCGGGAGCCTCTAATGCCATCACCTCAGTTTATCAAGTCCTACTTCAGCTCCTTCACTGATGACATCATATCGCAACCCCTTCAGAAGGGGGAGAAGAAAGATGAGGACAAGGATAAGGAGGGCGAGGCTGCTGAGGTCACAGAGAGCTCGGGCTATCTGAAGGCCAAGCAGTACATGGAAGAGGAGAACTATGATAAGATCATCAGTGAATGCACTAAGGAGATTGAATCTAAGGGCAGACACACTGCTGAAGCTCTGCTGCTAAGAGCCACATTCTACCTGCTCATCGGCAACGCCACAGCCGCCCAGCCCGACCTGGACCGAGTCATCAACATGCAGGATGCCAATGTCAAGTTGCGAGCAAATGCTCTGATAAAACGTGGCAGCATGTacatgcagcagcagcagccacaGCTCTCCACCCAAGACTTCAACATGGCAGCCGAAATCGATCCAAAGAATGCAGATGTCTATCACCATAGGGGACAGCTGAAGATCCTGCTGGACCAGGTCGAGGAGGCAGTGGCAGATTTTGATGAGTGTATTCTGCTCAGGCCTGACTCTGCACTGGCACAGGCACAGAAGTGCTTTGCTCTGTATAGACAGGCATACACTGGAAACAGCCCGTCCCAAGTGCAGACAGCCATGGACGGCTTTGAGGACGTCATCAGAAGGTTTCCAAAGTGTGCAGAAGGCTATGCCCTTTATGCACAGGCACTGACTGACCAGCAGCAGTTTGGGAAAGCAGATGAGATGTATGATAAGTGTATTGAACTGGAGCCTGATAATGCCACAACCTATGTCCATAAAGGGCTGCTGCAGCTCCAGTGGAAACAGGATCTGGACATGGGCTTGGATCTGATTAGCAAAGCCATTGAGATTGACAACAAATGTGACTTTGCCTATGAAACGATGGGAACCATTGAAGTCCAGAGAGGCAACTTGGACAAGGCCATCGATATGTTCAACAAGGCCATTAACCTTGCCAAGTCTGAGATGGAGATGGCCCATCTGTACTCACTCTGTGACGCTGCCTATGCACAGACCGAGGTGGCCAGGAAGTACGGGCTCAAGCCCCCAACATTGTAACCCTCCACCACCAATCCCACCATCTACTGCTGAGCCTGAATACACATCTCATATCCACGAACATTTGAGTTATTTCAATTTTTGTGTAAGGTGTTAATCCATTATCACAAGAGAGAAGGGCAGAGTCTGTTCTGGAGTCATGCGATTATGTTTACCGCATTGTGATTAGGGTGATAGAAAGGTAAGGGAATCCAAGCGAAGAGTGAGCCGAGGGTGAAAAAAGACGGGGAGAAAGAGAAATCAGTTCTCAGCTGCCTGGCACTTGTGGTGAAAACTAATACCACCCTTCATGCATGCACACAGCAGTGCACTTAGCGTCACTCATTATGCACCCTTTTGAAATCCCTAAATAATTTGAAGTATCGTAATATCAAGCTATGTTAAAAATAGTGTTAGTAATGTCAAACAAATTCCCCTAAAAAGCTTAATGCTGTGGTTTTTTAATTGAGTCTCTAACATATTTTCCATGGATATCTGTGTGCACACTATGGGAGAAATTATGTGTTTTCTGAGCTTTTTGCTTGATGGTGTGATAAATTGTTCCAATGTTCTTGACAGTTTGGCTGTTGTCACATTATAAGACTCAATATGCATCATTATTTTATGGGAAATGCAGGATGCACTGTTTCAGTTAAGTTGTCTAAGCCATGTGTAACAAGTCTGTGACTTAGCATGTCACCACTGTTATCGAcacattgtgtttatatatcatTGGGAAGAATTTGGGCCATACagtaatttcctttttttttccatatacatcctgatttcttttctttttttaaaagtaggggattgcctgtttttctttttatattctGTACAGCATGAGTGTAATttctctataaataaatattaagaagGCTCTCTTGCAGTAATAATGCCATCCAGTTAGTTGGTTTATTGAATGAGTGTCAGAAAAGATTAGCTTGTTTCAGTAGATGTGATGTATACGTTGTTTTATGCcagaaggaggggaaaaaaacaaccaaaccaaacaaaatttCCACTAATCCAGTGCAACCAATTGAAGACTCTCTAACCTAACGTGTgcactaaaatattgaattgaGAAATTTGTCAATTTATTGAGCTGTAACAGTGTCAAAGAAAATGATGTACATTCCCCACTTTGCTGCTTATTGCAACAGTTCatccagtttattttttattgcaaaataaattcCTGCCCTCTGTTCaactggaa

Function

GO: NA

KEGG:

id description
K17768 TOM70; mitochondrial import receptor subunit TOM70

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35735 lncRNA downstream 105 19984675 ~ 19985919 (-) True G30270
TU35712 lncRNA downstream 62045 19923763 ~ 19923979 (-) True G30255
TU35701 lncRNA downstream 72073 19913653 ~ 19913951 (-) True G30246
TU35691 lncRNA downstream 99286 19885468 ~ 19886738 (-) True G30236
TU35516 lncRNA downstream 372422 19599498 ~ 19613602 (-) True G30088
TU35741 lncRNA upstream 13265 20012425 ~ 20014005 (-) False glmnb
TU35799 lncRNA upstream 105092 20104252 ~ 20112518 (-) True G30320
XR_004579569.1 lncRNA upstream 198060 20197220 ~ 20199516 (-) True LOC117599142
TU35898 lncRNA upstream 200373 20199533 ~ 20207732 (-) True G30412
TU35910 lncRNA upstream 247445 20246605 ~ 20246871 (-) True G30421
XM_026918863.2 mRNA downstream 2727 19956717 ~ 19983297 (-) False tbc1d23
XM_026918854.2 mRNA downstream 2727 19956717 ~ 19983297 (-) True tbc1d23
XM_026923318.2 mRNA downstream 433331 19544152 ~ 19552693 (-) False bcl6aa
XM_026923309.2 mRNA downstream 433331 19544152 ~ 19552693 (-) True bcl6aa
XM_026924570.2 mRNA downstream 609860 19372430 ~ 19376164 (-) True im:7152348
XM_026912656.2 mRNA upstream 4199 20003359 ~ 20014094 (-) True glmnb
XM_034314524.1 mRNA upstream 26694 20025854 ~ 20032781 (-) True gfi1ab
XM_026921238.2 mRNA upstream 39790 20038950 ~ 20101162 (-) True evi5b
XM_034313306.1 mRNA upstream 40493 20039653 ~ 20101160 (-) False evi5b
XM_026921246.2 mRNA upstream 40493 20039653 ~ 20099416 (-) False evi5b
trnap-cgg_1 other downstream 599511 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 605512 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 1168826 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 1169694 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 1179274 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 1464701 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 1464701 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 1464701 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 1464701 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 1464701 21463861 ~ 21531428 (-) False raver2

Expression Profile