RNA id: XM_026921723.2


Basic Information

Item Value
RNA id XM_026921723.2
length 2495
RNA type mRNA
GC content 0.46
exon number 15
gene id lrrc40
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20674401 ~ 20683491 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACagaagagttagtgtgtagtttCTGGCTTCACAGACGCTGACTTCATGCAGTGTGTTGAATTACAGGGGTGTACGTTTTTATGTTGCTGTAAATGAGCGAGTGTGTGCGAGTTTCATGTCTCGGTTTAAGAGAGGAGCAGTAGCTGACCCTCGGGCTGGGTTCAGACAGGACACACCACAATGTCCGGTACCGTCGGGACTGCTGAAGAGCGCCAGGAAAAGCGGACAGCTCAACCTGTCCGGCCGCGGGCTCAGcgaagTTCCTCAGAGTGTGTGGAGGATAAACGTGGACCCTCCAGAAGAAGCTCAGCAGAATGTGTCCTTCAGTGCAGCAGAGCGATGGTGGGAGCAGACTGATCTCACCAAACTCCTGCTCTCCTCCAACAAACTCCAGACAATCTCCGAAGACATCAAACTCTTGCCTGCACTAGTGGTTTTAGATATTCATGACAACCAACTCACTACACTGCCAGCGTCTATTGGAGAGCTGGAACAGTTACAGAAACTCATCCTGAGTCATAATAAGTTGACAGAGCTGCCCACGGAGCTTTGGAGCCTGACAAACCTGCGATGTCTCCATCTGCAGCAGAACCTGCTCGAACAGCTGCCTGCAGACTTGGGCCAGTTGTGCCACTTGGAGGATCTTGACATTTCCAACAACAAATTAATGGCTGTACCAGACAGCCTGGCAGACCTCAGCAACCTCGTAAAACTGAATCTGTCCTTCAACAATCTGAAGAGCCTGCCGTCTGCAATCAGCGGAATGAAGAACTTGAGAATGCTGGACTGCTCTCGAAATCAGTTGGAGAGCGTGCCGCCTGTCCTGGCACAGATGGCGTCTCTCGAGCAGCTGTACTTGAGGCACAACAAACTGCGCTTTCTCCCAGAGCTGCCCTCCTGCAAAACACTCAAGGAGCTTCACTGCGGGAATAATCAGATTGAGGTATTGGAGGCAGATCATCTAAAACACCTGAGTGCTCTGAGTGTTTTGGAGCTGAGAGATAACAAGGTGAAGAGTCTTCCTGAGGAAATAACTGTACTGCAAGGCCTGGAGCGCCTGGATCTTACTAACAATGACATTAGCAGTGTGCCCTGTGGTCTTGGAACTTTGCCTAATCTGAAGTCTCTGGCTCTGGAGGGCAATCCTCTGAGGACGATCCGCAGAGATATTCTGACTaaAGGCACCAGTGAACTCCTGAAATATCTTAGAAGTCGAATACAAGAGCAGCCTGATGGAAAAGCCAAAGAGGGGCCGAACACAGCGATGACTCTCCCTAGCCAGGCCAAGATTAATGTGCATGCCATCAAAACACTGAAGACATTAGACTACAGTGAAAAACAAGAGGCATCTATACCTGATGATGTGTTTGATGCAGTCAATAACAGTCCTGTTGCCAACGTGAACTTCAGCAAAAACCAGCTGACTGCTGTACCACCAAGGATTGTGGAGCTGAGAGACACTCTAGCAGATATCAATCTCGGATGTAATAAGATTTCTACGATTCCTCTTGAATTTTCCAAGCTACAGCAGCTTGTACACATAGACCTCAGAAATAATCTGTTGACATCACTGCCAGTGGAGCTGGAAGCTCTCACCAAGCTGCGGAGCATCATACTGTCATTTAATAAATTTAAGTGTTTCCCAGATGTGCTGTACCGCATCTTAACCCTGGAGACAATTTTAATAAGCAACAATCAAGTTGGAGCCATCGATCCTGTGCAGCTTAAGCTGCTCGACAGGTTGTCCACTCTGGATCTGCAGAACAATGACATCATGCAGGTGCCACCAGAATTGGGTAACTGTACCAGCCTGAGGGCTCTGTTGCTTGATGGGAACCCTTTCCGTAACCCTAGAGCTGCGATTGTAGCTAAAGGAACGGACGCGCTTCTCGAGTATCTACGAAGTCGCATTCCTACATGAATTTATCGTCTTACAGGGTTGAGCTACCACCACTGCCACATAATTAAAGCACTATCTAATTCTGCAGACAAGACACAACACTTCTCTGCCATAAAAGTGGgtttttctgaatatttttcatgaaatgttcTTAGAGTAACTGTCAGCTTTTGTTCTCCTAAAGCCTCATGGCCTTAATGGGAAAGTTCCCAGAAATCACATGATATTTGTTTGAAATTCTGCAGTGATCTAGTGCACATGCTcattcttctgtctctctttatcatCTCTCTTATCATCACCTTATGCTTGCTGACCAAATTTACACTAAACTGCGCTGcacttgcatttattttattcttcgCCTGCATGTCTAAGACTAGCATGAAGACCATGTGACATGATTAAACAGGCTGTGTGTTTGCTACATTACATTTCAACTTCCAGTTCCATTTAAGAccttttagagttttttttggCCAAGaatatgtataatattaaaatacttttGATGGGAAAGCCAGGTATTCATTGTGCAATTGATTATTGTATCCAGAAAATCAAAATTCTTATTAAATTGATAATTTGCAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36067 lncRNA upstream 16321 20575962 ~ 20658080 (+) False dlg1
TU36042 lncRNA upstream 167755 20506323 ~ 20506646 (+) True G30545
TU36040 lncRNA upstream 168764 20505039 ~ 20505637 (+) True G30543
TU36033 lncRNA upstream 187191 20484465 ~ 20487210 (+) True G30536
XR_003403507.2 lncRNA upstream 190023 20480974 ~ 20484378 (+) True LOC113534552
XR_004579663.1 lncRNA downstream 87064 20770555 ~ 20781908 (+) False LOC117599214
XR_004579661.1 lncRNA downstream 87104 20770595 ~ 20781908 (+) True LOC117599214
XR_004579662.1 lncRNA downstream 87104 20770595 ~ 20781908 (+) False LOC117599214
TU36246 lncRNA downstream 151996 20835487 ~ 20889710 (+) True G30715
TU36252 lncRNA downstream 165000 20848491 ~ 20851676 (+) True G30721
XM_026916946.2 mRNA upstream 2655 20658819 ~ 20671746 (+) True meltf
XM_026916910.2 mRNA upstream 18649 20536973 ~ 20655752 (+) False dlg1
XM_034312229.1 mRNA downstream 140849 20824340 ~ 20868260 (+) True shroom2a
XM_034312242.1 mRNA downstream 148000 20831491 ~ 20868260 (+) False shroom2a
XM_034312244.1 mRNA downstream 148000 20831491 ~ 20868260 (+) False shroom2a
XM_034312234.1 mRNA downstream 170989 20854480 ~ 20868260 (+) False shroom2a
XM_034312249.1 mRNA downstream 170990 20854481 ~ 20868260 (+) False shroom2a
XR_003403752.1 other upstream 564176 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 1137387 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 1847481 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 1856926 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 4492098 16181318 ~ 16182303 (+) False mustn1a
TU36319 other downstream 331367 21014858 ~ 21017447 (+) False insl5a
XR_004579462.1 other downstream 1914850 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 2792460 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 3336887 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 3969499 24652990 ~ 24653965 (+) False LOC117598985

Expression Profile