RNA id: XM_026921783.2


Basic Information

Item Value
RNA id XM_026921783.2
length 1068
RNA type mRNA
GC content 0.46
exon number 3
gene id hdhd3
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16068404 ~ 16071040 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTCATTGCACTATAGTCCACTAGGTGGCGATCTGTTCATGGACTCCGATATGATATAAACGCGACGACGAAGAGGCAGTGCCGGAAGGGTACTTAGCTTGACCATGCGAGGGCCAGTGCGCTGGGTTTTATGGGACATAAAGGACACTCTCCTGAAGGTGCGTTGCTCCGTGGGAGAGCAGTACTCTAATGAGGCCAAACGTGTTGGACTGAATTTACCAGCCACGCAGATAGAGGCTGCATTCAGGGAAGCTTACCGCCAACACTCACGTCTCTACCCTAACTATGGCGTTGCTCAGGGCATAAATGGCCAGCTGTGGTGGACAGGATTGGTGAAGAGCATCTTCTCCCAGTGTGGGGTGCAGGACCCTGCATTGCTTGACACACTTGCCAACAATCTTTACCATAATTTTTCTGGTCCAGAGAACTGGGAGGTGTTCCCAGACTCAAATTCCACCCTAAAATCCTGCACAGCTCTCGGACTGAAGCAGGGTGTGGTATCCAATTTTGACAGGCGCCTAGAAGGAATCCTTCAAGGATGTGGCCTCCGAACctatttctcatttctgatgACTTCAGAAGAGGCTGCTGTGGCCAAACCAGACCCAGGCATTTTTGTCCAAGCCCTGAAAAAGTCCGGGGTGCCAGCCAAACACGTAGTCCATGTTGGGGACCACTACATAAATGACTACCTCACCTCTCGATCATTAGGTATTCGAGGTTATCTGCTAGATAGGCATGGACTCCAGAAACATCTGGATGTTCCCCCACAGCATCGACTACAGAGCCTAGATGAGCTACCAGCCAGAATATTACAGGAAACGGATTAAAACAGTTTACTTAGCTGAATAACTGCTGAATTTcttagatttattcatttaatttgtgttcAAGCAACTCACATTAAATACCATTTCCAAAGATGTCTTTGATCaactaaattatttttgtagGTACGCATGTAGAAGGTAATGCACTATGTAAACCCCCTACTCTATTCTTGTGTGGAATCTTGTATTAAGGCAAATTTTTAATgatcagaaataaaagtaaatgtttattcAAGAA

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0008967 phosphoglycolate phosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577052.1 lncRNA upstream 36269 16029134 ~ 16032135 (+) True LOC113533806
XR_003403456.2 lncRNA upstream 36269 16029134 ~ 16032135 (+) False LOC113533806
TU33146 lncRNA upstream 54295 16013347 ~ 16014109 (+) True G28132
XR_004579697.1 lncRNA upstream 107534 15943362 ~ 15960870 (+) True LOC117599231
XR_003403691.1 lncRNA upstream 160350 15896428 ~ 15908054 (+) True LOC113536643
TU33168 lncRNA downstream 2182 16073222 ~ 16076550 (+) True G28150
TU33170 lncRNA downstream 12249 16083289 ~ 16084968 (+) False slc2a11a
TU33176 lncRNA downstream 35003 16106043 ~ 16106272 (+) True G28156
TU33180 lncRNA downstream 50937 16121977 ~ 16122332 (+) True G28160
TU33182 lncRNA downstream 51856 16122896 ~ 16123140 (+) True G28162
XM_026934989.2 mRNA upstream 1625 16063124 ~ 16066779 (+) True trub2
XM_034300857.1 mRNA upstream 19606 16035453 ~ 16048798 (+) False rab44
XM_034300866.1 mRNA upstream 19606 16035453 ~ 16048798 (+) False rab44
XM_034300849.1 mRNA upstream 19606 16035454 ~ 16048798 (+) True rab44
XM_034300871.1 mRNA upstream 19606 16035454 ~ 16048798 (+) False rab44
XM_026929453.2 mRNA downstream 12651 16083691 ~ 16103248 (+) False slc2a11a
XM_026929375.2 mRNA downstream 12652 16083692 ~ 16103248 (+) True slc2a11a
XM_034300566.1 mRNA downstream 13285 16084325 ~ 16103248 (+) False slc2a11a
XM_026918596.2 mRNA downstream 68443 16139483 ~ 16156080 (+) False sfi1
XM_026918673.2 mRNA downstream 68443 16139483 ~ 16156080 (+) False sfi1
XR_004580083.1 other upstream 774050 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 876748 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 2567108 13498298 ~ 13501296 (+) False tshba
XR_004577010.1 other upstream 2569039 13496082 ~ 13499365 (+) False tshba
TU33403 other downstream 110278 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 2703730 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 2746362 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 3463401 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 4039090 20110130 ~ 20110225 (+) True LOC113537321

Expression Profile