RNA id: XR_003403256.2


Basic Information

Item Value
RNA id XR_003403256.2
length 1544
RNA type misc_RNA
GC content 0.39
exon number 5
gene id pxmp4
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14872948 ~ 14875990 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCTTGTTTCTGATCGACTGGCACGCGCTGTGCACGCGTGACTTTGTCACAGCATTAAGAAACCCTATTACTCAGATATGGCAGGGGCCGATGTTTTGAAAACCCTGCTCTATACAATCAACACCTTCCTCCAGCAGGAAAAATACAAAGCCGCTCTTGCTGTGCTTAAAGGATTCAGGAATGGCGCCGTGTATGGTGCCAAGATCCGGGCTCCACATGCACTGGTGATGACCTTTCTTTTTCGAAGTGGCAGCCTTCAATCCAAGCTGAAAGCTATAGCCCAagccacatatacacactcaagGAACCTAGCCTTCTTTGTATTTTCATATAAAGGACTGTTGGCACTTCAGAAGTACATTCAGGGAAAGAGTCTTCAGTCTCACTCGTTCTTGGCTGCTTGTCTTGGAGGTTGGCTGGTATTTGGGGACAATAACAATATCAACAGCCAGATAAATATGTACTTGCTATCTAGAATTCTGTTTGCCTTGTGTCGCCTGGCTGTGGAAAAGGGCTACATCCCCAAGCCCAAAAGAGACCCCTTCCCACTGTTTGCCACACTGGTGTGGGGCATCGTCCTCTGGCTATTTGAGTAccatcctcacacactgcagcccTCACTTCAGTCCTCTATGACCTACCTCTACCACAACAGCAACACATGGCACGACCTGTCTGATTTTCTCATATACAACACACCACGGATTTAAGCTTCTTGAGCATTCTTTTCTATTAAACCACAACTAGTGATGATGGTGAGAAAATTGTCAATCACAAGTTACATAATTTCCTCAGTGTAATCctaattttaaatgaacatatGATAACCTCtgattttgtacttttttgcacatttgtaaattAGTGTTCAAAAAGAGAACTATTTCATAATCGGCAAAATGaataacaaaacacaatttGAACACTTAATTGTTTGTTAAATTAGttattttttaaccttttattgCTCTTTGATGTAGGGCAATGTACTAGGTCCTATTTGAACtttaactttatatattttgcaACAGTGACTGCAAGCAAACAGTTTCTAAACTTATCAGTTAGTCCTTGACACTGTCCGATCACTCATGcataattatttttagtttatgaCCTTTATGGGTGTCAAAGTATTAACTTATTTCAGTCCTTGCTGTAGCAGCTCAGTAATGTGGACCAACTTAATCGTTTATGCTATGCTCTGACATGctctgacattttcatttttttcctttgctttttGGGACTTCTGTGTGATGCAGTGAGATGTAGTCTCTATTTCCTGGATATTCAACTAAATTTTTTGGAGGTCCACCTAATTCTTTGCTTAAAAAGtagTGCATCACATGACCACATTTGAGTAGCACCAAGGACACGGAGGAGATGAACTTGAagcagagaataaacacacacttctctgtccaattgtctttaaatgttctgcttttgttgttgacttttttaaacaagcaaTGTCCTTATTTCACTAATCAATACAGAGATAgccaaatgaaataataataaaaaaaatcttttaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32421 lncRNA downstream 12702 14860005 ~ 14860246 (-) True G27484
TU32377 lncRNA downstream 82307 14790431 ~ 14790641 (-) True G27448
TU32201 lncRNA downstream 380109 14492637 ~ 14492839 (-) True G27303
TU32157 lncRNA downstream 418657 14444626 ~ 14454291 (-) True G27259
TU32152 lncRNA downstream 471519 14354841 ~ 14401429 (-) True G27254
TU32441 lncRNA upstream 8265 14884255 ~ 14884487 (-) True G27502
TU32551 lncRNA upstream 134335 15010325 ~ 15010661 (-) True G27600
TU32615 lncRNA upstream 188895 15064885 ~ 15065211 (-) True G27652
TU32663 lncRNA upstream 254013 15130003 ~ 15130260 (-) True G27699
TU32669 lncRNA upstream 268715 15144705 ~ 15146155 (-) True G27705
XM_026923672.2 mRNA downstream 3245 14862967 ~ 14869703 (-) False tgm5l
XM_026923681.2 mRNA downstream 3245 14863000 ~ 14869703 (-) False tgm5l
XM_026923663.2 mRNA downstream 3245 14863233 ~ 14869703 (-) True tgm5l
XM_026913137.2 mRNA downstream 58501 14797637 ~ 14814447 (-) True vstm2l
XM_026913225.2 mRNA downstream 58504 14797637 ~ 14814444 (-) False vstm2l
XM_026927231.2 mRNA upstream 11475 14887465 ~ 15009183 (-) True LOC113534431
XM_034300435.1 mRNA upstream 14445 14890435 ~ 15009183 (-) False LOC113534431
XM_034300444.1 mRNA upstream 14445 14890435 ~ 14974051 (-) False LOC113534431
XM_026929263.2 mRNA upstream 134837 15010827 ~ 15024533 (-) True LOC113535748
XM_026929270.2 mRNA upstream 134837 15010827 ~ 15016270 (-) False LOC113535748
trnae-cuc_5 other downstream 480597 14392280 ~ 14392351 (-) True trnae-cuc_5
TU31994 other downstream 814503 14050401 ~ 14058445 (-) True G27107
XR_004579719.1 other downstream 965759 13873714 ~ 13907189 (-) False lhfpl4a
TU31814 other downstream 1238296 13632262 ~ 13634652 (-) False rps26l
TU31648 other downstream 1372964 13498605 ~ 13499984 (-) False slc5a8l
TU32819 other upstream 421319 15297309 ~ 15299019 (-) True G27843
TU32916 other upstream 580645 15456635 ~ 15461001 (-) True G27925
TU32920 other upstream 585960 15461950 ~ 15469229 (-) False oxtr
TU34409 other upstream 2396965 17272955 ~ 17280173 (-) True G29158
XR_004577384.1 other upstream 2637722 17513712 ~ 17529315 (-) False si:dkey-44g17.6

Expression Profile