RNA id: XM_026922402.2


Basic Information

Item Value
RNA id XM_026922402.2
length 4810
RNA type mRNA
GC content 0.45
exon number 20
gene id arhgap9
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 11536329 ~ 11579131 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTAGTGTTCATGTGGAGGGAGGAGGCGGTTAATTGGGACGCCATTTAAAGCAGCGCAGCGCGTGGTCACGTGACCGGGGCAGAGTGTAAACGCTGGAGCGGAGTTTGAGTTGTGAGAAGATGCTCGGCTCATCTTAGGATATTTGGATTACAGATCCTGAAAGCACCTGCAAAAGAGCATGGCACAATGGACATCACACTGTCTCGTCCCGCTGTCCAACAGTGCTAGCTGCTACTGTGGCATCAGCCCTTCCACCTGGTGTCACTGAGAGTCATGTTGTCAGGCAGCTGGTACAGGAGCATGACCAGCCCCACCCACAGCCTTCCAGTGGGCAGGGGGTCATTGACACCTGGTCTTGTGGTTCTGGAAGCCCAGTATGACTACTCATACCGTGGGGCAGATGGACGGACTATCTCCATACATGACGGTGAGCGCTTTCTGTTGCTGAAAAAGACGAACTCTGACTGGTGGCAGGTGCGGAGGCTCGGAGTGGACAAGAAAACTAAGCCACTGTACGTGCCCGCCACTTATGTCATCGAGGTGCCAGTCAACACACTGCATTCACCACAGACCAGCACTCAAACAGCAGCCTCACCTCAACACTCCATGCTGGTGGTTCGCAGATCGCACAACCCATGCTCTCAGATACAGTGCTCAGCACCTGCTAAAGAATTCTGTCGTTCCATGGAGGACCTGAACAGTAACAGTGCTTTTAAGAGCACATGCATGGGAAAAGGAGCACCAGGAAGACATTTCACCACATCACCCATCTCGACAACCGCCTCACCTTCAGGTCAACTCAAGGTCCCGCGGTCTCTGTTACCACGCAGCAAAAGCTCCAGTCACCTGCCTCAGAACCCATACAGGGAATTGCACATCACCAGGCCAAGTCCATCCAGCTCACCTAAGTCCTTCAGCCAGTGGGATGTGGCAAGCACCACTCGCAAACACACAGACGGAAACATCCAGGCCTGCATCTCTCAAAATTCATTGACGGACACGCAGAAGAAACAGTGGGCAGAGATCCCTAGCCCACTCCCAGGCCAGAAGCCTTTGCAGATGCTGCATTTGTGGGAGCAGTACCAAGACCCTGCCTCCGGTCGCTTCTACTACATCAACAGCGTTACAAAGGAGCGCTCATGGAAACCGCCACGTAGAGCTCGCCAGAATAATCATATCCAAAATACGGGCAGTGTTACACAGATTGGGACTTCCCCATGTGACTCCAGCCGCCTGTCACTTCCCCTTTACAACTCAGGAAGCAAAATGTTTAGCAGGCTCTCCTCTGACCTGACCCACAGTACCCAGGATGCAAATGTACGACAGCTGAGTCAGACCATGCAGCGTGCAGAATCATCAGACACGCTCAGTTCTTCCTCCTTTACTACTGATGCCCAGAGCACAGAGGGCAGAGAGGACATCGCCCAATCCTACTCCTTGATTCTGCCTTCCCAAACAGACAGGATCTCTTCAAATGGCAAGTACCAAAAGGTGGTGGAGTCGCCCGACAACTCTCCGGACAGCAATGGAATGACACCGGAGCTGGAAAAAGCAGGTCTGCTCAACAAAACCAAGATAGCAGAAGGAGGTCGGAAGCTGAGGAAAAACTGGAACCTCTCGTGGGTGGTGTTGGTGGGGAACAGTCTTATGTTCTTCAAAGATCCCAAAACCCAAAATTCTGATAGCTGGAAACCGGGGAACAGCTGTCCAGAGAGCAGTGTGGATCTACGAGGAGCTCAGCTGCAGTGGGCCAATGAGCTTTCCAGCAAGAAGAATGTCTTCAAGtTGAGGACGGTTACAGGAAATGAATTTTTGCTGCAATCAGACACTGACTCTGTAATTAGAGAGTGGTACAGCATAATACAGAAAGTCATTGACAGACTTgatAAGGAGAATCCTCTGGATAATGTATTGCAGTATTCTTTGAGGAGAACAGGCTCCTTGGAGTTGTTGGACCATAGTGGAGATGAAGAGGAGAATCGTACAGGACACAAGCCCTCACTCCCTCGCTCCATCTCTAATTTGGAGACATCGGAGCGGAAACGAGTGAAGAGTCGCCTGAAAAAGCTCATTCTGAGGAGACCACCAATTCAGGCATTACAGGAAAAAGGCCTTATCAAAGACCAGGTGTTTGGCTGTAGTTTAGAGTTGCTGTGTGAGAGGGAGAAGAGCACAGTGCCACGGTTTGTCAGGAACTGCACTGAAATAGTGGAGAAGAAAGgtttAGAGACAGATGGCATCTACAGAGTCAGTGGAAATCTGGCTGTAATCCAGAAACTACGCTTTGCTGTCAATCATGAGCGAGCTGTGTCTACAGACGGACGTTATCTCTTTCCAGAGGATTTAGTGCCAGTGGAGCATGTGGACCTGGAAGACCCGCAGTGGGAGGATATCCATGTGATAACAGGAGCCCTGAAACTCTTCTTTAGAGAGCTTCCTGAACCACTTGTACCTTATGGACTCTTTCAAGACATTGTCGAGGCTGTCAaGCTGTCTGATTACATGGATAAAGTGGAACGGATGAAATCACTAGTGGTCAGCATGCCTCCCCCTAACCACAATACCATGAGGCACATGTTCCAGCATCTTAAGCGCGTGATGGAGCACTCAGATAGTAATCGCATGACAACGCAGAACATCGGAATCGTCTTTGGGCCAACTCTGATGCGTCCGCAGAGCGACTGTGCGAACATGGCCATTAACATGGTTTATCAGAACCAGGCAGTAGAACTCATCCTCAGTGAATATGACCAGATCTTTGGATCTGACCCATCCAGATCTCTCTGACGCTAGTGTGGAACATGGACAGCAGCATAACCTGCTCACTGTGAATCAGAGGAATCTGAAACGCATGGAAGGGGAGCTAAATATGATCCATGCAACTGTTCATTAAACTTCAGCGATGCCACAAATTCCATCCTggtggatgatggatggatgaatggttgGATGGAAGTGCTTGAGCAACAATCAGCCAACTGGCCTTTAGTGGGCACAAAGTCACACAAAAAACATGTGTTTTCAAATTGAATCAAGAGGCTTATTTTATGTtcgttaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaatgtgatgtCTCCTCACAAGTGTTTTTCATTGTATTGTTTGCAGCAACTTGAAAACCACACATTTTGCGTTGGCAAAAAAAGACATTAGCCTCCATGAActaaattctgtaaaataaaatcagcaatAGTCACCCAATAGGCATAAACAAGAAGACAGTTCTGAAATCTAACCTGTTATTCAACTGCATTTaagtcatttcatttcttttttaacaatCCAAATTGCTATGTAGTCTCCTTTTCCATTGTTCCAGCAGTATGGCtgtggtgtgtgcatgtgtgtgcctgtgtgtgtgtgtgttgtgcgtgACAGATAGAAGGGCAGAAGTATGTTCCGTATTTTTCTCGTTGATTCGGTGGAGCTTTTTGCCACTATTGGTCCAAATCTCTGTTTTTAATAACAGAACAAAAGAAGAGCTAAAAAtgcattatgtttaaaaaatgtggaGTAAACCCCCCACCACCCCCCATCAGCACCAGGGCTTTGGTAATTTTATATTGACTGTGGCTTGGCAGGAGACAAGAAGAAGTGAGAGGCAAGAAAAAGAACATGGAGAGCATATGGATTTTAATGTtagagtttatatatttattcatttttttattttcttattattgcTATGGGCGGCATGAAGGATGGGGGAGATTACTGAAGTAATATAAGtggagaaatgaaatgaagtctTATgctatttttgttacttttaagTACTTTGTTGGATATTTAATGAACTGTTGTCCTTCTCTTAATACTGTTGTAAGTTGCCCATGTATTTTTGTGCCATCAATTTTTTAGGAACCTCCTTTCTCattggaaaaacattcataACCAATCTGTTTTATGCCAGGGGCTCTCAAATGCAATCCTACTCTGCATGGTTTGAAGATTTTCTATGCCCACCACACACCTGATCCAAATcctgtttaaatgtgtttctaGAACTGTACAAGTCTTGGAATTTCAAAGATAtcttaaaactgtgatttgaaaTATTGCCTGGAATACTCTGCTCCGAGCCGGAACAATGCTATGCAGCCCTACACCTTGGCCTTAAAAGGAAGCTGACAAGACGTATAGTTTTAACAGAGGAGATGTGGTTGGTTGGGGGGAAGGAAATAGCTTGTCAttgttttcattgcaattgCAGTTTGCCTCATAGGCAGTAGAGGACAATTACAGTTTGCTCCTTTAACTGTTTAATTGAATCATGTGTGTTAGAACTAGAACTAGAAATAAAACTTCAAACTGTGCAAGTCAGCATCAGAGTTCAGAAGCCTTGTCTTAACCTCAGAAGGACCGCAGAAAACAAGGTCATACTAGCCTGAATAGTAGCCGGAATAGTCCatcaaaattcttttatttattgtgccaAATGTTTGGCCCAATGACCTTTGACTGATCCCCAAACAATTTCCATTCTTCCAttgtacacatatatatgtttgtCCCTAAACTGTATGTTAAGCGAAAGGACACTTGTACTATAgtataatatttcttttttttatcacgTAACTTCAGGTTTTGGACTGCAGCCATTTGGTATCCCATTCTCATAACCTAGCATTTTAATGTGATGGCTTGAATACTGTTCTTAAGTTTTACCAACATGGCTAATTGCTGGTGTATGccttttctcttcctccagATCCTGTAAGCTACTTTGagcaaaatatttgaaaataaaagccaattaataaatatgtgaatatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU30029 lncRNA upstream 50963 11484801 ~ 11485366 (+) True G25387
TU30016 lncRNA upstream 74984 11461122 ~ 11461345 (+) True G25374
TU30014 lncRNA upstream 75858 11460261 ~ 11460471 (+) True G25372
TU30013 lncRNA upstream 78325 11457778 ~ 11458004 (+) True G25371
TU29997 lncRNA upstream 90893 11445124 ~ 11445436 (+) True G25357
TU30050 lncRNA downstream 607 11579738 ~ 11580030 (+) True G25408
TU30052 lncRNA downstream 6276 11585407 ~ 11585643 (+) True G25410
TU30064 lncRNA downstream 40038 11619169 ~ 11623069 (+) True G25422
TU30080 lncRNA downstream 83099 11662230 ~ 11663094 (+) True G25434
XR_004579590.1 lncRNA downstream 89688 11668819 ~ 11688224 (+) True LOC117599151
XM_026925428.2 mRNA upstream 15419 11517494 ~ 11520910 (+) True ddit3
XM_026919898.2 mRNA upstream 35813 11486737 ~ 11500516 (+) True dctn2
XM_026919906.2 mRNA upstream 35813 11486737 ~ 11500516 (+) False dctn2
XM_026919915.2 mRNA upstream 35813 11486737 ~ 11500516 (+) False dctn2
XM_026919922.2 mRNA upstream 35813 11486738 ~ 11500516 (+) False dctn2
XM_034312199.1 mRNA downstream 116500 11695631 ~ 11753218 (+) True LOC113526407
XM_034312206.1 mRNA downstream 116500 11695631 ~ 11753218 (+) False LOC113526407
XM_034312208.1 mRNA downstream 116500 11695631 ~ 11753218 (+) False LOC113526407
XM_026913468.2 mRNA downstream 116500 11695631 ~ 11753218 (+) False LOC113526407
XM_034312220.1 mRNA downstream 116500 11695631 ~ 11753218 (+) False LOC113526407
TU29627 other upstream 627757 10906200 ~ 10908572 (+) True G25029
XR_003403740.2 other upstream 781707 10754515 ~ 10754622 (+) True LOC113537259
TU29055 other upstream 1337874 10197966 ~ 10198455 (+) True G24500
TU28879 other upstream 1629158 9895245 ~ 9907171 (+) False LOC113530691
XR_004577034.1 other upstream 1939475 9591941 ~ 9596854 (+) False LOC113532547
TU30526 other downstream 625398 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2
TU30617 other downstream 947039 12526170 ~ 12527491 (+) True G25908
TU31442 other downstream 1686896 13266027 ~ 13331868 (+) False si:dkey-238f9.1
XR_004577014.1 other downstream 1916725 13495856 ~ 13499365 (+) False tshba
XR_004577009.1 other downstream 1916726 13495857 ~ 13499365 (+) False tshba

Expression Profile