RNA id: XM_026922698.2


Basic Information

Item Value
RNA id XM_026922698.2
length 3670
RNA type mRNA
GC content 0.45
exon number 22
gene id mov10a
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13200052 ~ 13214563 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGCGGTTACTGTTCTGCAGCTGAAACGAAACACAAGCAGCTGATTAGCGGAGCAATGTCTTCACTCAGAGAAGTTTATGAAGTTGGCTTGGATTTCATCGAGTTCTTGggtgaaagaaaatcaaaaacggACAAAAAAGAGCTTCGAAACATTTACACCTCCGAGTTCAAAAGGGAAGGAGGACCGAATTTTTCTAGGTTGGTCTACGCCTTGCTGTGTTTCAACAAAGCCAGTGTAAGAAAGGGAAAAGTTATCCTGCATGCCAAACCTCAGGTACGTCTGTACTACTGTGACCAGTGGAGATCTAGCACACACTCAAAGCCAACTGTAGGCTCGAGACCTGATGATGAAGACTGCACCGCTCCAGACACTAGGCAAGGTGCCCCTCACTCATCACCCAGTGTCAACCCCGTCCTCACACCAAAGAGACGACTGGCTCAGGAAATCCTTCAAAAACTCAGGGCAAACAGACCACAGCTTATCTCTGATAAGGGAGGCATCGAGATCACATCTTCTCCTGTGAGCAGAAATGGAAAAGTTGTGATCAATATTGAGCTTCTAGACAGAGTGTATGTGGTGAGGTTTCAAATCGTAAATAAAGGGCAAAAGTGCATTCACTTCACCTTCTACACAGCACTGCACAGGATACGCTGCTTCACTTTAGTGAGTGAGAGGAGAGTGAGCAGGGTTTCTCCTCTGCTTCTTTGTCCAGGTGAGAGCTATGCAGTTGAGGTGAAGTACCAAGCTCGCCACTATGGCTGCTTCCCAGCCACCATGTACTTTGAGTTCTGCCCCGAGTCCGAGTCTTCAGACCCCCCCAAACCTTTCTGCATTGTGAGGGAAATTGAGGCAGTGGTGCACACTCAGCTGGGCACTGAGCTGGGCCCAACGAGTCAGTATAGAGCCAGACAAAAAGGGCAGAAACGCCCCAAGGACCGACTGGTGGAGGAGGGTGTGCCTCCTGAGAGCATGAaacatgctttaaaacaaaCTGTGAAGCTGAAAGACTATGGGTACTCAGCTTACCTGAAGAACTTGGTCCAACACTGGAACACTGATATTGAGAAACTTTCTCCTACAGCCAGGCAGCAGCTTCTCAGAGTGAGAGGTGTGTTGGAGTCACCCCTGTCTATAAAGCAGTACGCTGAACGTTTCCACCTTGTCCTACACCTAGAGGAGATTCAAATGGAAGAGGATATACAGAAGTATGATCTGTATAACCAGACCATGAAAcaggacaaaacaaacaaaaacctgcTTGTACTGCAGgtaCCTGGAGTGGTGGAGAACAGGCCGTCTGTGCTAAGAGGAGATAACTTGAATGTGTATTTGTCTGAAGATAAGACCCAACCTATCATTATGTATAAAGGCTATGTTCATTGTGTAGAACTGGAGAGGGTTAAGCTGGGCTTTTCTAAGAAGCTTGTACAGAAGTTCATTGCCAATATGAAGTTCAATGTGGAGTTCAGCTTCAATCGTTTCCCACTTAAACTCCAGCATCGAGCTGTACAGCTGGCTGCTGAACACAGGCTGGGAGACGTGCTGTTTCCCACTCACAATGGAGTCAAGCAAACAGCATTGCCGAAGCTAAGGATATACAACCGAGATCTGGAGACCAACCCTGAACAGAAGGCGGCTGTGCAACACATTTTGTCTGGTCAGCATAAACCTGCCCCATACCTGATCTTTGGCCCACCTGGCACAGGAAAAACTATCACACTGGTGGAGGCCATAAAACAGGTGAATAAATCTGGTCCTGGTGTCCATGTTCTGGCCTGTGCTCCTTCTAATAGTGCTTGTGATCTGCTGTGTGAGAGGCTACTGGGATTCGTGGATGCCCATCGTCTGTTTCGTCTCTATGCCAGCAGTAGAGACCCCCGTACAGTTCCACAGAAACTACTGAAATACAGTAACTGGGTTGAAGGACAGGCCAGTTTCATCTTGCCCTCTAAGAAAACTCTGATGGACTACACCATCATTGTGGTCACGCTCATCACTGCTGGAAGGCTTGTGTCTGGAGGCATCCCAGTTGGTCACTTCACACACATCTTCATAGATGAGGCCGGACAAGCTGTGGAACCTGAATGTGTTGTCGGAATTGCGGGTCTTCTCCATCCTGAGAAGGGCCAGTTGGTTTTGGCTGGAGACGCTAAGCAGCTTGGCCCTGTCCTTAGATCTCCACTGGCACAACAACATGGACTGGGGCTTTCACTGTTGGAGAGACTGATGACCCAAAACTCCCTCTATCAGAAGAACCAAGATGGGTGCCAAGGTTATGACAGTTGCTTTGTCACCAAGTTACTACGTAACTATAGGTCTCATCCTGCCATTCTGAAAATCCCTAATGAACTTTTCTATGAAAATGAGCTGCAAGTATTTGCAAATCAGATGGAGCGAGAGGCCTTCTGCCAATGGGAGCACCTTCCAAAACAGGGTTTCCCAGTGATATTCCATGGGGTGATGGGAAAAGATGAGAGAGAAGCAAACAGTCCATCCTTTTTCAATGTGAGCGAGATAGAGGTCCTCATCAGCTACCTCAAAAAGCTCCTGCTAAGTCAGGGAAAGAAGGGTCTGCCCAAACTCAGTGCCAATGACATTGGCATTATTGCTCCCTACAGGAAGCAAGTGGAGAAAATGCAGAAAGCTCTCAAAACAGTAAGAGAACTACATCAGTGGAAAGACATTAAGGTGGGCTCAGTGGAGGAGTTCCAGGGGCAGGAGAAAATGGTGATCATGGTGTCTGCGgtcagaagcagcagcagctatGTTAAGTTGGACCAAGACTTTAACATTGGTTTCCTCACAAATGAGAAGAGGTTTAACGTAGCCATGACCAGAGCCAAAGCTCTGCTCATTGTGGTAGGAAACCCCGTCATCCTGAGCAAGAATCCAACCTGGCAGAGgTTTTTTCAGTACTGTGAGCAAGAGCAGGGCTACACTGGCTTTGAATACAGGGATTTTGAGGGGGAGGATGATGTGGTGACTCGGCTGGCATCTTTAAAAATCCACACCTCCGCTGACGAAATAGAAGAGAGTGCAGTGCAACAGCATGTGCATCCAGAGTGGAGAAGTGAACAGTAGAAATTCCCGCAGATCAACCGTCAACCATGTGGTCAGTGAGAGGCTGAGCGATGGGCATTGCAGCACCTTCCTaaactgctgttataataaaaaaagagcagaGACACTTTCAAGAGTTAATACCAACTATATAACTATACTGCCTGAAGCATTTCTTCATGCTCTGATGTGAAATACTTTTACATTGTTTTCCTATTTGACTTTCTTTTCCTATTTCAACTAAGGTACGATAAATTGAAAATCAACACAGATCACGATCCAGGTTTAAACAGTAAATTAACATAATTAGCATCAAGCACTTAGTACAAAGCCATTTCTATGCTTTCATGATTTCTCGCTTTCAGAATGAATCATTTACTTTTGGAATATCTTTATATGGGTATAtgtatttgtccttttttttaatcactgttagCTTGCACCTTTTTGAGAGAAGTTTATTGTTTGTCTAGTTTAAAGAATATGTCAGCTGCTATGTTTTAAAGCCTTAATCTGCTCTGGTCCAGATGCTACTTGCatcttttgaggaaaaaaaaaaaagatccagaatggagaaaatttatttcaattaaaattttcCATTCTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31025 lncRNA upstream 291958 12855396 ~ 12908094 (+) True G26266
TU30985 lncRNA upstream 400198 12799618 ~ 12799854 (+) True G26233
TU30983 lncRNA upstream 402023 12797696 ~ 12798029 (+) True G26231
TU30981 lncRNA upstream 404751 12795088 ~ 12795301 (+) True G26229
XR_004577066.1 lncRNA upstream 437766 12758499 ~ 12762286 (+) True LOC117595882
XR_003403407.2 lncRNA downstream 137283 13351846 ~ 13374496 (+) False LOC113533310
XR_003403408.2 lncRNA downstream 137283 13351846 ~ 13373810 (+) True LOC113533310
XR_003403409.2 lncRNA downstream 137283 13351846 ~ 13373810 (+) False LOC113533310
TU31569 lncRNA downstream 220341 13434904 ~ 13517403 (+) True G26749
TU31582 lncRNA downstream 275598 13490161 ~ 13497729 (+) False tshba
XM_026916713.2 mRNA upstream 43908 13147270 ~ 13156144 (+) True wnt2ba
XM_026928202.2 mRNA upstream 60399 13120303 ~ 13139653 (+) False cttnbp2nla
XM_034298925.1 mRNA upstream 60399 13127220 ~ 13139653 (+) True cttnbp2nla
XM_034297980.1 mRNA upstream 82496 13086941 ~ 13117556 (+) False phc2b
XM_026924017.2 mRNA downstream 51225 13265788 ~ 13332177 (+) True si:dkey-238f9.1
XM_026924026.2 mRNA downstream 82429 13296992 ~ 13332177 (+) False si:dkey-238f9.1
XM_026941676.2 mRNA downstream 226630 13441193 ~ 13448129 (+) True LOC113543455
XM_026929119.2 mRNA downstream 241999 13456562 ~ 13466321 (+) True LOC113535652
XM_034300793.1 mRNA downstream 252879 13467442 ~ 13490077 (+) True sycp1
TU30617 other upstream 672561 12526170 ~ 12527491 (+) True G25908
TU30526 other upstream 992795 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2
TU29627 other upstream 2291480 10906200 ~ 10908572 (+) True G25029
XR_003403740.2 other upstream 2445430 10754515 ~ 10754622 (+) True LOC113537259
TU29055 other upstream 3001597 10197966 ~ 10198455 (+) True G24500
TU31442 other downstream 51464 13266027 ~ 13331868 (+) False si:dkey-238f9.1
XR_004577014.1 other downstream 281293 13495856 ~ 13499365 (+) False tshba
XR_004577009.1 other downstream 281294 13495857 ~ 13499365 (+) False tshba
XR_004577011.1 other downstream 281294 13495857 ~ 13499365 (+) False tshba
XR_004577010.1 other downstream 281519 13496082 ~ 13499365 (+) False tshba

Expression Profile