RNA id: XM_026922851.2


Basic Information

Item Value
RNA id XM_026922851.2
length 5882
RNA type mRNA
GC content 0.47
exon number 10
gene id ror1
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 21634567 ~ 21756087 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTCGTGTCTGATTTCCACCAGCAGGTggcgacacacacactcatgtcgGGAGCGCGTGGCCTCAGCTCAGGGGGCCACCATCATACGAGAAGTGTGTGTGCGGTGTTTTAGCTTGCATGTGGAAGAGTGCAGGAGTCAGAGAGGGGGGTGAAAGTAAAGTCCAGCTCCTAAAcacaagaggaagaagaggagagagagagagagagagagagagagagagagagagcgcagggCAGCAAACACGCGCGCGTAAAGAGCTCCAAAGACTTGGTGCACTTTCCAGTCCAGTGTTTGAATCCTGAGTGTTTTTGCAGTGGATGTACAGGCATGTCGCCGGAGCGCGAGAGTGGAGGAAGGAGGTGGCCGAGGCGGACAGCACAGACACTGGCACCGCGAGGatgccaacaacaacaacaacaacaacaacaacaccgcTGCTTTCTGCACTTCATCATGATTGTGCTGAGCAGCTGCATGATGCGCACTGCTGCCGgaGCAGAAGCTCCCTCTGAGCCGAACGTGGTGACTGCCTCCAGCTGGAATGTTTCCAGTGAAGCACAGAAAGACCACTTCCTCAGGCTTGATGCTCCCATGAACAACATCACCACGTCCCTGGGCCAGACTGCCGAGCTGCACTGCCATGTCGGAAACCCGCCGCCCACTGTGCGCTGGCTGAAGAACGACGCTCCGGTGACTCCAGAGGCGCGGCGTGTTTCCTACAAACAGACTCCATACGGCTCTCGACTGCGCATTCGCAACCTGGACACCACCGACACCGGCTACTTCCAGTGTGTGGCCACCAACAGCTATGGCACTGTCTCCACCACGGGAATCCTCTTTGTAAAATTCGatccactgccaacCCCCCAGTCTGGAAAGCCTTCACCagAGGACTTTGATGAAGAAGGCTTCTGCCAGCCGTACAGAGGAATTGCCTGTGCTCGCTTCATCGGGAACCGGAGCATCTTTGTTGACTCACTGCAAATGCAGGGCGAGATTGAAACTCAAATAACCGcTGCCTTCACCATGATTGGCACATCCAACCACCTGTCGGATCGCTGCTCTCAGTTTGCCATTCCCTCGCTCTGCCACTTTGCCTTCCCCACATGTGACCGGAGCTCTGGGATTGATAAACCACGAGACTTGTGCAAGGATGAGTGTGAGATCCTGGAGAATGACCTGTGTAAGACAGAGTACATCATCGCCCGCTCCAACCCAATCATCCTCAAACGACTCAAACTGCCCAACTGTGAGGACCTGGCCGCTTCGGACAGCCCCGAGGCAGCCAACTGCATGAGGATAGGCATCCCTATGGGCGAGTCCATCAACAAAAATCACAAGTGCTTCAACAGCAGCGGCTCTGATTATCGGGGCACCACCAGTGTGACGAGGTCAGGCCGCCAGTGCCAGCCGTGGAACTCGCAGTATCCACACAGCCACACCTACCTAGCTGTGCGCTATCCAGAGCTAAACGGCGGCCACTCATACTGTCGTAACCCAGGCAACAAGCAGGAGGCTCCGTGGTGCTTCACACTGGATGAGAGCGTTCGTATGGAGCTGTGTGACATCCCTGCATGTGACCCGGAGAAGCGTGGAGGCAGCAGTATGGAGATTCTCTACATCCTGGTCCCCAGTGTTGCCATCCCTCTAGCCATCGCCTTGCTCTTCTTTTTCATCTGCGTGTGCCGGAATAACCAGAAAGCCTCACGTCCACCCACCCAGCGCCAGCCCAAACCTGTACGCGGCCAGAACGTGGAGATGTCCATGCTGCCTGCATACAAGCCCAAGACTAAAGCCAAAGAGCTGCCTCTGTCAGCTGTACGTTTCATGGAGGAGCTGGGTGAGTGCACCTTCGGTAAAATCTACAAAGGTCACTTGTACCTGCCAGGTATGGAGCATGCTCAGCTTGTGGCTATCAAGACTCTGAAGGACTTCTCCAGCCCACAACAATGGAACGAATTCCAGCAGGAGTCTTCTGTCTTGGCAGAGCTCCACCATCCCAACGTTGTGTGCCTTCTGGGCGTGGTGACACAGGAGCAGCCTGTGTGCATGCTCTTCGAGTTCCTGCCACTTGGAGATCTCCATGAATTCCTGGTAATGCGCTCTCCACACTCAGATGTAGGCTGCAGCAGTGATGAGGACGGCACAGTTAAGTCCAGCCTGGACCATGGAGACTTCCTGCACGTTGCAATGCAGGTAGCAGCTGGCATGGAATACCTGGCCAGCCACTATTTTGTCCACAAGGACCTGGCAGCAAGGAACATACTTGTAGGAGAGCAGCTTCATGTTAAAATTTCAGACCTGGGACTGTCAAGGGAGATCTATGCTTCTGATTACTATCGTGTGCAGCCTAAAACTCTGCTTCCCATCCGCTGGATGCCTCCAGAAGCCATCGCATATGGAAAGTTCACCACAGACTCTGACATATGGGCTTTCGGAGTGGTTCTTTGGGAGATCTTCAGCTTCGGCCTTCAACCCTATTACGGCTTCAGCAACCAGGAAGTGATTGAGATGGTGCGCAAGAGGCAGCTGCTGCCTTGCCCAGACGACTGCCCGCCACGCGTCTACACATTAATGAACGAGTGTTGGCAGGAAGGACCTGCACGGAGACCAAGGTTTAAGGACATCCACGCTAGACTGCGTGCCTGGGAGGGCTTGTCATCCCATGCCAGCTCCAGCACACCATCAGGAGGCAATGCCACCACTCAGACCACCTCGCTCAGTGCCAGCCCTGTTAGCAACCTCAGCAGCCCACGCTACGCTGGATACATCTATGGAGCTCCTCAGGGGCTACAAGCAGGTCAGATTGCAGGTTTTGTGGCAGCACCAATGCCGCAGAACCAACGCTTCATCCCTGTGAATGGATATGCCATCCCTCCAGGCTACACTGCTTTCCCAGCAGCCCACTTTGCCTCAGCTCAGGCACCCACGCGAGTGCTCCAGCACTGTCCTCCCCCTAAGAGTCGCTCCCCCAGCAGCGCCAGTGGCTCCACCAGCACAGGCCATGTTACTAGCGTGCCCTCTACAGGCTCAAACCACGATGCAAACACGCCACTGCTTTCACACTGCGTCACTCTAGCTCCTGTGGCCACCATGCAGGGCGGCGCGGTGTCCATGTTTGGACACATGGCACAAAAGGGGCTGCCGATGGACCCGGCTCAGGCGTCTCTGTTAGCCGACTCCAACAGACTCATGTACAGCGAATCAGTCATCACCGCTGACTTGTGAATACatctttccttttttgtaaatgattataattattgatattttaaaatgttttctttcactgTGTAAATACCAACTAGCCAGAATGGAATGTAAAAGATTTatattctatgtttttatatgaaaaatgcaagaaaagaaTAAAGGAAAGCTTCATCTCCTTTTACTGATGATATCAGTATGATACCTGAAGAAGACTTTGGGACACTGATTTTATGCCGCTCGCTTTtttccagcagcagtgagctTGCTGTAAAGGAATCCTCAACTTGATCACAGCCCTGAAATACAGTGGTCATGAAATCATGCCTTTTCACTAACTTCTGCCTCAAAACCATTTTCGATGGACTTTGGCTTGAGCTCAagtctcactctcttttctcAAAGTCATCATTCTGACAGTTTGGTTTAGTTTTAGTATTGACTATTGAAGGTTGATCTACCAATTACTGCCTTTTTAAGTTATGATTTCAACTCTACACTGCCTTTTCAGGTGGTTTTAAATCTTACCAAATTCTAGTGAATTCAATCAATGCAGCTATACATATTCATTGTATAGACTAAAAGCCTTTTATGCCTGACCTCTGGTAAAGCTTATCTCAGTATTTCTTGTCATAAACTGGAGAGTGCTAAGGCCCTAAGGCCAAAATTAAGACAAAGATATTACATTTATAGTGTGTCCATGTTTTATGAGAAAAGAAGGTTTATGACAAAAGGTGCTTCACATTGGCTTAATAATCAACATTAAGATGTCTCACAGTACTTAGTAAGCATTTTTCAAGTCAGTAATCATAATTTTAGCAGGAAGAACAAATTGCCACTCACTGAATGATACTAGTTGTAATCTTAGCATTGTCGGCTATACATTTacattgcatttatatttacattaaattatttggcagacacttttatccaaagtgacttacagttTATCTGAGCAGATGAaggttaagggctttgctcagtggcagcttggtaaTATTATCCAAAATCACAAAATTCTGATCATTAATCCAGATCCGTGACCACTGAGTCCCCACTGCACCAGAGCAATATCGTTGAACACAGCTAGGCTATCTATCTTCTGAGTGGCCTGGAATGCTCTCAACCTATCTGTGTGCTGGCTGGCCCACCAGGCTCTCTATCTGACTATTGTTGTCATTGATCAGCTGAGCTACCTATCTGTCTAGCTGTCTTACTGGGCAGCCAGTTGTGCTGTCTGTCTATTGTCTAACTGACCAACCATGTACTCTGTCTACCTGTACCCTAATTGGCTGGCTGACCCATCTCTATTTTCCctttcctgaagttaataaaacagatTGTATCTTTACCAAGAAACGACAGATCgctctgccctgaagactttcccctgATGGAAAACTTTACCTCTGTctgaacagctttacctctgatcgttacaaagcactgacatatgagactccttccaaaaatactaaatcagcgtctcctaacagaaaaaatcaccacatcaacaattacatgttttacaAATCTTCTAATTTGGAACATctgccatgcaagtccctgttagttgttactgtagaaactataatgataattaaaatacattaaaataaatttgtaatttgtCTTACAGTGGAAACTTTTGTCgtatagaaaatttatcaacaccttctgaccagtcagatttgagaattcaacggCGCCACGGTATAAGCAAAATTGAACTCCATCATAATGTATTTGTCTTATGAAAGCTGGCTATTGTGTATATGCACAGGGATCACAGGGGCTCAGAGTTTTCTTACTGTAGAAGTGAAGTGAAtgcattttctctcttcttcttctttcctcaTATTATTGACAAATCCTGTATCTGCCAGCTAGTATTATCATGTTCTTAATTCCTTTGTGCGTCGACTTGTCTAGACTGGACTGGGACCTTCACCTTAGAGGTCGCAGGGATTAGCTGCACTGTCTAGTCACTAGCTCTTTTCTTATGTTTATTTTAGTTAGTTGCTATGCAACTATCAATTGCAGATGTGCACCAGGGTTCAGGCTGTCATTCAGGGTACAGTTAAAAGGTTACACATACAAAGCTAGAACAATCTTCTCCGCAAATGCCTTTTTGCCTGTGTCATGACATGTTATGGCATATTATGAACGAACATCACCTTGCTATGCATGTAGTAACTGATATTTGaattaatagtttatttttgAATCAATGGTTTATTTTTGTACGTTTTGTAACAGCAATATTGCAATATTCTTGTACCTCTAACCATACTGAGACTCTTAGTGATCATGATTATGGTATGAGCTCATGTTTGTAACATGTGGACAAATCACATAACTGTTCTTTCTAAGTGTCTTCAAACATTTGCCTCCAGGAATATCGGAGGTCTTATACAGCTGTTTGATTTGTAACCATGATCGCTTGTGCGACAAGTCAAAAACCACTTAATACTGAAGACTGTGAATCATTTTTTGGCTCTCCGTAAAGGGGCGCCATTAAGGACACAGTAAATACATGTTAAACGTTTACACTCTTTATATGTCAACTTATGTGGccttgattttcttttttttgttattgtgagAAAAGATTTTTGCACAAATAGTTTGTATGGCAAAATTGCTATTAAACAActgttttttgtca

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG:

id description
K05122 ROR1, NTRKR1; receptor tyrosine kinase-like orphan receptor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU37144 lncRNA downstream 18892 21615321 ~ 21615675 (-) True G31492
TU37138 lncRNA downstream 21745 21569856 ~ 21612822 (-) True G31486
TU37143 lncRNA downstream 25400 21607396 ~ 21609167 (-) True G31491
TU37141 lncRNA downstream 30704 21602544 ~ 21603863 (-) True G31489
TU37132 lncRNA downstream 102108 21532248 ~ 21532459 (-) True G31481
TU37369 lncRNA upstream 348111 22104198 ~ 22104411 (-) True G31681
XR_004577195.1 lncRNA upstream 374338 22130425 ~ 22132698 (-) True LOC117596032
XR_004579711.1 lncRNA upstream 417264 22173351 ~ 22175740 (-) True LOC117599244
XR_004579710.1 lncRNA upstream 440507 22196594 ~ 22197668 (-) True LOC117599242
TU37433 lncRNA upstream 468298 22224385 ~ 22226660 (-) True G31742
XM_034298204.1 mRNA downstream 55488 21538999 ~ 21579079 (-) True cachd1
XM_026919886.2 mRNA downstream 103140 21449546 ~ 21531427 (-) True raver2
XM_026930493.2 mRNA downstream 233639 21386910 ~ 21400928 (-) True ak4
XM_026930484.2 mRNA downstream 233640 21386910 ~ 21400927 (-) False ak4
XM_034314869.1 mRNA downstream 256255 21342709 ~ 21378312 (-) False dnajc6
XM_026928315.2 mRNA upstream 8828 21764915 ~ 21777950 (-) True pgm1
XM_026921318.2 mRNA upstream 40473 21796560 ~ 21815679 (-) True alg6
XM_026923416.2 mRNA upstream 66655 21822742 ~ 21825474 (-) True foxd3
XM_026927983.2 mRNA upstream 201448 21957535 ~ 21968209 (-) True atg4c
XM_026916652.2 mRNA upstream 237608 21993695 ~ 21996721 (-) True angptl3
XR_004580163.1 other downstream 103139 21463861 ~ 21531428 (-) False raver2
XR_003403848.2 other upstream 1860070 23616157 ~ 23632013 (-) False uap1
XR_004577321.1 other upstream 4144643 25900730 ~ 25907994 (-) False LOC113538393
XR_003403851.2 other upstream 4325062 26081149 ~ 26105456 (-) False slc19a1
TU39875 other upstream 4874742 26630829 ~ 26638504 (-) True ecrg4b
TU39865 other upstream 4883746 26639833 ~ 26649379 (-) False si:ch73-23l24.1

Expression Profile