Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026923416.2 |
| length | 2733 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 1 |
| gene id | foxd3 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 21822742 ~ 21825474 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0060351 | cartilage development involved in endochondral bone morphogenesis | biological_process |
| GO:0048484 | enteric nervous system development | biological_process |
| GO:0048485 | sympathetic nervous system development | biological_process |
| GO:0001755 | neural crest cell migration | biological_process |
| GO:0050935 | iridophore differentiation | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0001822 | kidney development | biological_process |
| GO:0048846 | axon extension involved in axon guidance | biological_process |
| GO:0007389 | pattern specification process | biological_process |
| GO:0048937 | lateral line nerve glial cell development | biological_process |
| GO:0030318 | melanocyte differentiation | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0001658 | branching involved in ureteric bud morphogenesis | biological_process |
| GO:0007422 | peripheral nervous system development | biological_process |
| GO:0051090 | regulation of DNA-binding transcription factor activity | biological_process |
| GO:0009790 | embryo development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005667 | transcription regulator complex | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0008134 | transcription factor binding | molecular_function |
| GO:0003690 | double-stranded DNA binding | molecular_function |
| GO:0008301 | DNA binding, bending | molecular_function |
| id | description |
|---|---|
| K09397 | FOXD; forkhead box protein D |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU37144 | lncRNA | downstream | 207067 | 21615321 ~ 21615675 (-) | True | G31492 |
| TU37138 | lncRNA | downstream | 209920 | 21569856 ~ 21612822 (-) | True | G31486 |
| TU37143 | lncRNA | downstream | 213575 | 21607396 ~ 21609167 (-) | True | G31491 |
| TU37141 | lncRNA | downstream | 218879 | 21602544 ~ 21603863 (-) | True | G31489 |
| TU37132 | lncRNA | downstream | 290283 | 21532248 ~ 21532459 (-) | True | G31481 |
| TU37369 | lncRNA | upstream | 278724 | 22104198 ~ 22104411 (-) | True | G31681 |
| XR_004577195.1 | lncRNA | upstream | 304951 | 22130425 ~ 22132698 (-) | True | LOC117596032 |
| XR_004579711.1 | lncRNA | upstream | 347877 | 22173351 ~ 22175740 (-) | True | LOC117599244 |
| XR_004579710.1 | lncRNA | upstream | 371120 | 22196594 ~ 22197668 (-) | True | LOC117599242 |
| TU37433 | lncRNA | upstream | 398911 | 22224385 ~ 22226660 (-) | True | G31742 |
| XM_026921318.2 | mRNA | downstream | 7063 | 21796560 ~ 21815679 (-) | True | alg6 |
| XM_026928315.2 | mRNA | downstream | 44792 | 21764915 ~ 21777950 (-) | True | pgm1 |
| XM_026922851.2 | mRNA | downstream | 66655 | 21634567 ~ 21756087 (-) | True | ror1 |
| XM_034298204.1 | mRNA | downstream | 243663 | 21538999 ~ 21579079 (-) | True | cachd1 |
| XM_026919886.2 | mRNA | downstream | 291315 | 21449546 ~ 21531427 (-) | True | raver2 |
| XM_026927983.2 | mRNA | upstream | 132061 | 21957535 ~ 21968209 (-) | True | atg4c |
| XM_026916652.2 | mRNA | upstream | 168221 | 21993695 ~ 21996721 (-) | True | angptl3 |
| XM_026916634.2 | mRNA | upstream | 209739 | 22035213 ~ 22046458 (-) | True | usp1 |
| XM_026916626.2 | mRNA | upstream | 209739 | 22035213 ~ 22046196 (-) | False | usp1 |
| XM_026916618.2 | mRNA | upstream | 209739 | 22035213 ~ 22046195 (-) | False | usp1 |
| XR_004580163.1 | other | downstream | 291314 | 21463861 ~ 21531428 (-) | False | raver2 |
| XR_003403848.2 | other | upstream | 1790683 | 23616157 ~ 23632013 (-) | False | uap1 |
| XR_004577321.1 | other | upstream | 4075256 | 25900730 ~ 25907994 (-) | False | LOC113538393 |
| XR_003403851.2 | other | upstream | 4255675 | 26081149 ~ 26105456 (-) | False | slc19a1 |
| TU39875 | other | upstream | 4805355 | 26630829 ~ 26638504 (-) | True | ecrg4b |
| TU39865 | other | upstream | 4814359 | 26639833 ~ 26649379 (-) | False | si:ch73-23l24.1 |
