RNA id: XM_034311072.1


Basic Information

Item Value
RNA id XM_034311072.1
length 2089
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC113532395
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18139055 ~ 18146917 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtttttttttttaagactgcCTACATGTTCAGTCTTAAATCCACTGTTTAACAGACCCTGAATGAAGTGAATTAAGTGTAgagtatacattttattatattaaatcgACCGGGCATTTCAAACCGGAACAAACTACGTCACCTGGAATCTTGCGCTTGCGCAACATAAGTTCCAGGTTTCAGCAGCAGGGAGCTGGtacaGTATGGCGTCTGTTAAACACAAGAATGCGAAAAGGATAGAAGGACTAGACAAAAACGTATGGGTTGCCTTCACATCTGTAGCTGCAGATCCCTCCATCGTAAATCTCGGTCAGGGTTTCCCAGACATCCCTCCTCCATCTTACGTGAAAGATGGTCTTGCGCAGGTTGCAATGGTGGACCGGCTCAACCAGTACACGCGTGGCTTTGGTCACCCAACTCTGGTGAAAGCCCTGTCTCAGGTGTACAGTAAGGTGCACAGCCGTCAAATTGACCCTTTCAAAGAGATCCTGGTGACGGTGGGAGGCTACGGCTCTTTATTCAGCATCTTTCAGGCCCTTGTGGAAGAGGGAGATGAGGTTATAATAATTGAACCGTTCTTTGACTGCTACATTCCTATGGTAAAGATGGCAGGAGCCAAACCAGTTTTAATACCACTTCGCCTTAAATCCAGTAAGAAGGCAGACATCAGCAGTGCAGACTGGGTTCTAGATCAGGACGAACTTGCCAGTAAATTTAATTCCAAGACGAAAGCCATCCTTATTAACACTCCTAACAACCCCATCGGGAAGGTGTTCAGCAGGAGTGAGCTGCAGGCTATCGCAGATCTCTGCATCAAGCATGACACATTGTGCTTCAGCGATGAAGTGTACGAATGGCTCATATACAAGGGCCATGAGCATGTTAAGATAGCGAATCTTCCTGGCATGTGGGACCGAACCATTACTATTGGCAGCGCAGGAAAAACATTCAGTGTGACGGGGTGGAAGTTGGGTTGGTCAATCGGGCCTGAGCACTTGGTCAAACACCTCCAGACTGTCATGCAGAACACACTGTATACCTGTCCAACACCACTACAGGAGGCAGTTGCGCGTAGTCTCCTGATTGACTGCGAGCGAATGGGGCAGCCTGACTGCTATTTCTCCAGCCTAGCTGAAGAgctggagggaaagagagaccgcatggcagccattttgaagcaGGCAGGGATGTGTCCTGTAGTTCCTGAAGGAGGCTACTTTATTATCGCCGATGTCACAGCTCTCAATCAGGATCTTTCAGGCATGGAAGGTGATGAGCCATATGACTACAAGTTTGTCAAGTGGATGATAAAGGAGAAAAAACTGGCAGCCATTCCTGTAACAGCGTTCTGCGGGGATGAATCCAAAAAGCAGTTTGAGAAATACATCCGGCTGTGTTTCATTAAGCAAGACAGTACGCTGAACGCTGCTGAGGTCATTCTGAAGAACTGGAACAAAGCCTGACCCTGGATGTCACAGCAACGCTGCATTAGTCTTCATCACTCAGTGCTGAAGGGGAGATCCACATCCCCTCTGATGAacgtgtgcagtgtgtaataGCAGTGTTTTTAGCCCTAAGTAATGACAATAGCACAACTCACATTGACAACAATTACAGACAACTACAACTGACCTTATATAATGTCTACAGCATCACATGCTCTCAGATAGAAGATGTTACTATTGCTATATGGAGACTGGTAAGCAATGACAGATATCTGAAAGAAGACAGACAACAGTAATTGACACTGATGCAAGAACGTTAACCTCTTTACCTGCTTGAGCATATTCAGTAGCATCTGCCTTGTAGGAATGTATTATTAGATCAGTTGTATTATTAGATCAGGCCTCTCAGCCCTTGTTTAGGGACAGAAACAGAGTTGTACAAGGGCTCCGCCCCTGAGGCTTCTGTTTTAACATACTATTGCTATTTTTATTGCTATTGATATTTACAGAGTGTATTCCCAATTTTCTGGACATTTTCCATGGAATGCAAATGTGGACTACCATTTAATCTCAGTTTAAATGTTTGGTTTGAGAACTGAATAGTCTGATCTAATTAAAGGTCTTCCCACTAGACTGTTAAA

Function

GO:

id name namespace
GO:0097052 L-kynurenine metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0016212 kynurenine-oxoglutarate transaminase activity molecular_function
GO:0047315 kynurenine-glyoxylate transaminase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34548 lncRNA upstream 53411 18083719 ~ 18085644 (+) True G29281
TU34336 lncRNA upstream 374282 17694754 ~ 17764773 (+) True G29106
TU34335 lncRNA upstream 450320 17683821 ~ 17688735 (+) True G29105
TU34246 lncRNA upstream 603704 17530575 ~ 17535351 (+) True G29036
XR_003403713.2 lncRNA downstream 211285 18358202 ~ 18360035 (+) True LOC113536874
XR_003403164.2 lncRNA downstream 317967 18464884 ~ 18467320 (+) False LOC113530672
XR_004580300.1 lncRNA downstream 317969 18464886 ~ 18467320 (+) True LOC113530672
TU34849 lncRNA downstream 541736 18688653 ~ 18691007 (+) True G29561
TU34870 lncRNA downstream 671808 18818725 ~ 18835721 (+) True G29569
XM_026925523.2 mRNA upstream 216236 17918400 ~ 17922819 (+) True barhl2
XM_026923587.2 mRNA upstream 298073 17804545 ~ 17840982 (+) True znf644b
XM_026913172.2 mRNA upstream 371775 17666584 ~ 17767280 (+) True tgfbr3
XM_026917816.2 mRNA upstream 670897 17465581 ~ 17468158 (+) True gadd45ab
XM_026917757.2 mRNA upstream 701156 17433426 ~ 17437899 (+) False znf648
XM_034300733.1 mRNA downstream 151458 18298375 ~ 18411183 (+) False LOC113536767
XM_026930929.2 mRNA downstream 151465 18298382 ~ 18413955 (+) True LOC113536767
XM_034311144.1 mRNA downstream 454042 18600959 ~ 18614825 (+) True dzip1l
XM_034314518.1 mRNA downstream 694520 18841437 ~ 18857162 (+) True LOC113527312
XM_034299801.1 mRNA downstream 711522 18858439 ~ 18917006 (+) True farp2
TU33403 other upstream 1956752 16181318 ~ 16182303 (+) False mustn1a
XR_004580083.1 other upstream 2844701 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 2947399 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 4637759 13498298 ~ 13501296 (+) False tshba
XR_004577013.1 other upstream 4639690 13496154 ~ 13499365 (+) False tshba
TU34871 other downstream 627853 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 670485 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 1387524 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 1963213 20110130 ~ 20110225 (+) True LOC113537321
TU36319 other downstream 2867941 21014858 ~ 21017447 (+) False insl5a

Expression Profile