RNA id: XM_026923907.2


Basic Information

Item Value
RNA id XM_026923907.2
length 2359
RNA type mRNA
GC content 0.41
exon number 6
gene id atp1b1a
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20199525 ~ 20207753 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGAGCCGGGTACGACTCTGTCCTTTCCGAAAAAGTAGCTGAAAGGAATACAGCTCTGGCGGTCAGGTACCTGAACGAAAGCCACCAAATaaaaaaccccaaataaagttaCACAAAGGGAACTAAAAGAACCGAAAATGCCCGCGAATAAGGAAGGCGACGGCGGATGGAAGACCTTTCTGTGGAATTCTGAAAAGAAGGAATTTTTAGGACGTACCGGCGGCAGTTGGCTTAAAATCTTCATCTTTTATGTAATCTTCTATGGCTGCTTGGCTGGAATTTTCATTGGCACCATCCAGGCGATGCTCTTGACCCTTAGCAACTACAAGCCCACGTACCAGGACAGAGTTGCACCCCCAGGCTTATCACACACCCCACGCTCCGACAAAGCTGAAATCTCCTACAGCCTGCAAGAGGAAGACAGTTATAGGCTATATGTAAAAGCCATGAAAGACCTGCTGGAGCCATACAAAGACGAAAAGCAGTTGGATGACATGAAATATGAAGACTGTGGTGATGCTCCGGCTAAATACATTGAACGTGGGGACTTGGAGAGTGACACAGGCGTAAGAAAGGCCTGCCGCTTCAGGAGGTCCTGGCTGGGAGACTGCTCAGGCGTGGAGGACAACAGCTTTGGCTTTAGGGATGGCAAACCCTGCCTTATTGTCAAGCTCAACAGGATTGTCAATTTCAGACCCAGGCCTCCCAAAACCAATACCTCGCTCCCTGTGGCTGCTGGTGGGAAGGTTCCACAGTTTCTGATTCCTATATACTGCAGCGGCAAGAAAGAAGAAGATACTGAAAAAATCAAAGAGATTAAGTACTTTGGCTTGGGCCAAGGATACCCACTGCAGTACTATCCTTACTATGGCAAGCTGCTACACCCCGATTACCTCCAGCCTCTCGTGGGCATCCAGTTCACCAACATTACCCATAATGAGGAGCTGCGTGTTGAGTGCAAAGTATACGGAGATAATATTGATTACAGCGATAAAGACCGTTATCAGGGACGTTTTGACCTCAAAATCATGGTCAAATCATGACCACAGCTATGAATATAGCGCTTTTACTCTGCCCATTTCAAAACGTAATAATTTagacagatgaaaatgaaaaaataagagagttcaataaaaaaaaaaacaaaaaaaacaaacaaaccacgACTAGTCTTGAACAAACTTTCATAACATACGGGACCTACACTTAATCTGTATGCTTTACACTAGCTTTCTCTGCATATGTCTAGGGTTAGAATGtaaacattacaggaagagtAGCAATAGCAAAGTATTTATTCTACTGTAAATGAGAATATTCCTTGAGCCATGGGACATGTTCAttcattactgtaaattatgATTCCACTACTGATGTAGCGAGCAGTGTTTCTGTCCCTGAGTATTTCTGCCTAGTGTGGTCTCGCTCTATATTTTTGGAGTGTGCAGTGCAGTAGTCGCATACAATGGTCCTTTCCAAGCCATGTTATAATTTCTGTTGTCTTATGTGAGTCATTTTAGTGgtccaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagaaagagagagtgtgtgtgtaagtaaaagTTTGTATAtggttgtgggtgtgtgtgtttgtatttgtacaatataaaaaaagaaaatagtggCATGGTACGCGCTGATATCCCCAGGTCCATATGTGAGTAAATGACTGCACTCCATggaatcttttttctttctctatttgACTTATTTTGTTGATTGTGGGGAAAGTACTTTTACTTCACTTCTTCTCTTATTTGATCATCTTGCAGTGTGGGAGTTTGGGGTTAATGACATTTCTGTATAAggcttttactttctttctcttcaagtGTAGAACTGTGTGTATCTAGTTTGGAGGATCGGCTCCATTCTAGAATGGAGGACTGTTCCTCCCTATGGTCACCGTGGCAACTCAgtgctttaatttaaattttttttttttttttttttttttttttgttttgttttttctttttttttgctggagaCATCACAATGTGGTGTAACTTTCTAATGAATGTTTTAGCCATTTACATGGTGgaagaattttatatttatgcagttgtacaattttttttctgcaggaaAAAGTGTATTGTATGAATCCAGATACCAAAGTCACTGGTCGGAGTTAGAAACTTTTCAGATCCAATGCAGTACCCCATGTAATATGATGTTTCGTCAATGTTAAAAGTGCTTAAAAGTCAATGTTGGACGTAAGAACATCTGTCAGGAGTTGCATCTGctcttgtcattttatttaatacaggtAAGgcctaaacaaataaatgtacaacCAACCTGA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0005890 sodium cellular_component
GO:0005391 sodium molecular_function

KEGG:

id description
K01540 ATP1B, CD298; sodium/potassium-transporting ATPase subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35757 lncRNA upstream 159551 20037735 ~ 20039974 (+) True G30288
TU35863 lncRNA downstream 26222 20233975 ~ 20234772 (+) True G30382
TU35929 lncRNA downstream 125990 20333743 ~ 20334121 (+) True G30436
TU35935 lncRNA downstream 152837 20360590 ~ 20361838 (+) True G30442
TU35938 lncRNA downstream 160060 20367813 ~ 20368152 (+) True G30445
TU35941 lncRNA downstream 164953 20372706 ~ 20373062 (+) True G30448
XM_026921295.2 mRNA upstream 87006 20104204 ~ 20112519 (+) True rpl5b
XM_034310260.1 mRNA upstream 179299 20000046 ~ 20020226 (+) True LOC113543059
XM_034310262.1 mRNA upstream 187174 20000046 ~ 20012351 (+) False LOC113543059
XM_026941073.2 mRNA upstream 196200 20000046 ~ 20003325 (+) False LOC113543059
XM_026920715.2 mRNA upstream 243619 19909283 ~ 19955906 (+) False tp63
XM_034311045.1 mRNA downstream 37821 20245574 ~ 20249361 (+) False zgc:172121
XM_026926725.2 mRNA downstream 38228 20245981 ~ 20249458 (+) True zgc:172121
XM_034311038.1 mRNA downstream 51068 20258821 ~ 20265493 (+) True si:ch211-201h21.5
XM_026927129.2 mRNA downstream 107272 20315025 ~ 20324579 (+) True actl6a
XM_026942739.2 mRNA downstream 121690 20329443 ~ 20333691 (+) True ndufb5
XR_003403752.1 other upstream 89300 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 662511 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 1372605 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 1382050 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 4017222 16181318 ~ 16182303 (+) False mustn1a
TU36319 other downstream 807105 21014858 ~ 21017447 (+) False insl5a
XR_004579462.1 other downstream 2390588 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 3268198 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 3812625 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 4445237 24652990 ~ 24653965 (+) False LOC117598985

Expression Profile