RNA id: XM_026923995.2


Basic Information

Item Value
RNA id XM_026923995.2
length 3016
RNA type mRNA
GC content 0.46
exon number 12
gene id shmt2
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 11902218 ~ 11937563 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagggtgtattccctcctcaggcccagtgttcccaggagaGGCTCTAGAGCCACCATTACCCAGGATGAAGCGGTTTCtaaaaatgaaggaatgaagagTTATGCACTCTTTTTTACTCTTGTCATTTGCAGTCTTGACATTTTATCAGTGGTAAACTCACTATCTTTTAGTTTGTATTAGCTAGTCGACGATGTAATGGGATGCCACGTGGATTGGCTCGCAAAGGGTATGCAATGACAGAAACTACAAGTCCCATGAAGCCCTTGCACGTTGCGAACTCTACTAGCGCTGGCTGTCgggtcttgtgtgtgtgtgtataagtgtgtgtgtagggagcaGAGAGCCTGGCTGCTTGGAGCTTTTCCACCACGTTATCATCATGTTGACACTGCCAGTGAGATATTTAGTCAGGCCTCTGTGCCAGCGTGTGACTGTGAGTCTGAGAGGGCAACACTCTGCAGCAGCACAGGTACCTGATCATGATCGGCCCTGGACCGGACAGGACAGCCTGGCACAGGATGATCCCGAGATGTGGGACCTgttgaagaaagagaaagacagacagtgtCGTGGGCTTGAGCTCATTGCTTCAGAGAACTTCTGCAGCCGAGCAGCACTCGAGGCCCAGGGCTCCTGCCTCAACAATAAATATTCAGAAGGATACCCAGGAAAGAGGTATTATGGCGGTGCGGAAGTAGTGGACCAGATCGAGCTTCTGTGTCAGAAGCGTGCTCTTGCTGCTTTTGATCTGGACCCGGCACTCTGGGGAGTTAACGTTCAGCCGTACTCGGGCTCGCCAGCTAACTTCGCCGCCTACACAGCCGTGCTGAATCCCCATGAGCGTATCATGGGTCTGGACCTGCCTGACGGAGGACACCTTACACATGGCTACATGTCTGATGTGAAGcgaatctctgctacttccatCTACTTTGAGTCTATGCCCTACAAACTCAATCCTAAAACAGGTCTGATAGACTACGACCAGATGGAGCTGACTGCGAAGCTGTTTCGGCCCAGGCTGATCATCGCTGGCACCAGCGCTTATGCCCGCCTCATCGACTATGCTCGCATCAAGAAGCTGTGTACTGAGTTAAATGCATACCTGCTGGCAGACATGGCCCACATTAGTGGCCTTGTGGCTGCTAAAGCTGTTCCCTCTCCATTTGATCATGCTGACCTCGTCACCACAACCACACATAAATCCCTCAGAGGAGCcagAGCTGGCCTGATATTCTACCGTAAGGGCGTGCGCTCTGTGGATAAGAAAGGTGCTCAGGTGATGTATGACCTTGAGGACAAGGTCAACTTCTCAGTCTTCCCCTCTCTCCAGGGAGGTCCCCACAATCACGCTATCGCTGGGGTTGCTGTGGCTCTGAGACAGGCCAACACCCCAGTGTTTAGAGAATATATTGCACAGGTGATGAAGAATGCTAAAGCCATGGCTGATGCATTGCTGAAAAAAGGATATACTCTTGTATCAGGTGGGACTGATAATCACCTGGTGCTGGTTGATTTGAGACCACAGGGAATGGATGGAGCACGTGCTGAAAGGGTTTTGGAGCTGGTCTCCATTACAGCCAATAAAAACACCTGCCCCGGGGACAAGAGTGCACTCACCCCTGGAGGCCTGCGACTGGGTGCCCCTGCTCTGACCTCTCGGCAGTTTAAAGAGGCAGACTTTGAGCGTGTTGTGGACTTTTTGGACGAAGGCTTCAAAATCGCTCTGGACGTCAAGAAAAAGACCAAGAAATTAGCAGAGTTTAAGAGCTTCCTTCTGGAGGATCCTGAGACTGTTGCACGGATTGGTGACCTGCGCAGTCGGGTGGAGGCATTCGCTCGGCCTTTCCCCATGCCAGGCTTCTCCGACCACTAACGCGGAGCCGAGACTGAGAAACGAGTGAAGCTCCACATCCATCTAGGAGCCTTTCGGCTACTCGCAGCAGCGTAAACAGTGAGAAATGTATCAGTATTGGGATAGAACACTTTTTCTACTTTATATGAGCCTTGTTGGTAAAACACAAAGTGAAATGTTGCTAGATGCTGCTTGAGTACCTTCATCACTGCACAGAATTCTGCTGACTCTAAgaacaaaatgttatttttttttctaaacctaAAAGTCTTAATGAGCCCAGTAGTGCAAATAGACTATCTACAACTAGTTTTCTTCACATTGCAGCTCTCTCGTGATGTATAACAAGACctgatgtgtgtgatttagtTTGGGATGCCCATGCTTTTTGATTTTCGTTTTTTAAGTGATGAATCAAGAGCCTGAAAATACTGGTACTTAAATGCAAGCTCAAGTTGAACAGGAAGTAAATATCAGACTGGCCAAGCTAGTCTGGCTTGGGCAACACAAAATAGACAGCTCTAGTTGTATATCTCTGATAGTCTTAATCCTGGATGAACCTCCAGCTAGAGTAATCGATACTTAGcttacattcatttttatataactcAACAATCCTTATGAGACCTTGCACAGTTCCTGATGGATCATTGTTTTGCAAAGACACTCAGTGTTTACAAATCAATCTTAACCGTTAACTGCAGAGCAAATGTCAACCACAAATCTGTGTATGCATCAGCATGGACCATTTTCTGTCTCAAGCTAACTACTGCTGctgtgaaaacaaacaaaaaaattctacttaataattaaatacagtatgttttgaAAGTATAGAGTAATATTACAGAGCGTTTGGAGTCGTAGCTCATAGGGGGTGGGGTCAAGTACTGGCAAGTTCTTTTAACAGTGCAGTTTTGCCAAATATACACTTAATTATAACCCTTCCTTGTTAACTAAAGTGGTTATAATGGGATGAACTTGTATAACGACGTGACCAATTGTATACTGTGTTGTACTTGTCTTGTCTTTGCCCTGTTTACATGACTCATTCTCCAGCACTCTGTTCATCAAACCTTTTTATCTATAAAGTTTTTTAAGTAGACATTTACAAAGTGATTTTATAAAACTAATCCCAATAAATTTGTGCATTAACTAAA

Function

GO:

id name namespace
GO:0006544 glycine metabolic process biological_process
GO:0006563 L-serine metabolic process biological_process
GO:0035999 tetrahydrofolate interconversion biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0004372 glycine hydroxymethyltransferase activity molecular_function

KEGG:

id description
K00600 glyA, SHMT; glycine hydroxymethyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403548.2 lncRNA upstream 96759 11803590 ~ 11805459 (+) True LOC113534932
TU30103 lncRNA upstream 110093 11732424 ~ 11792125 (+) True G25452
XR_004579590.1 lncRNA upstream 213994 11668819 ~ 11688224 (+) True LOC117599151
TU30080 lncRNA upstream 239124 11662230 ~ 11663094 (+) True G25434
TU30064 lncRNA upstream 279149 11619169 ~ 11623069 (+) True G25422
TU30282 lncRNA downstream 8530 11946093 ~ 12038014 (+) True G25624
XR_003403381.2 lncRNA downstream 19665 11957228 ~ 11974989 (+) False LOC113533008
XR_003403384.2 lncRNA downstream 19690 11957253 ~ 11974989 (+) True LOC113533008
TU30578 lncRNA downstream 337289 12274852 ~ 12275052 (+) True G25872
TU30588 lncRNA downstream 355360 12292923 ~ 12293129 (+) True G25882
XM_026947319.2 mRNA upstream 9478 11832707 ~ 11892740 (+) True LOC113547077
XM_026947391.2 mRNA upstream 9478 11832707 ~ 11892740 (+) False LOC113547077
XM_026927166.2 mRNA upstream 141615 11754563 ~ 11760603 (+) True LOC113534407
XM_034312212.1 mRNA upstream 149000 11695631 ~ 11753218 (+) False LOC113526407
XM_026927376.2 mRNA downstream 82683 12020246 ~ 12026634 (+) True h6pd
XM_026917519.2 mRNA downstream 94484 12032047 ~ 12035789 (+) True cenps
XM_026911066.2 mRNA downstream 245484 12183047 ~ 12203172 (+) False cfap20dc
XM_026911010.2 mRNA downstream 245538 12183101 ~ 12203172 (+) True cfap20dc
XM_026911202.2 mRNA downstream 245538 12183101 ~ 12203172 (+) False cfap20dc
TU29627 other upstream 993646 10906200 ~ 10908572 (+) True G25029
XR_003403740.2 other upstream 1147596 10754515 ~ 10754622 (+) True LOC113537259
TU29055 other upstream 1703763 10197966 ~ 10198455 (+) True G24500
TU28879 other upstream 1995047 9895245 ~ 9907171 (+) False LOC113530691
XR_004577034.1 other upstream 2305364 9591941 ~ 9596854 (+) False LOC113532547
TU30526 other downstream 266966 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2
TU30617 other downstream 588607 12526170 ~ 12527491 (+) True G25908
TU31442 other downstream 1328464 13266027 ~ 13331868 (+) False si:dkey-238f9.1
XR_004577014.1 other downstream 1558293 13495856 ~ 13499365 (+) False tshba
XR_004577009.1 other downstream 1558294 13495857 ~ 13499365 (+) False tshba

Expression Profile