Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026924038.2 |
| length | 1273 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 2 |
| gene id | cav3 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 15456646 ~ 15461002 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0042693 | muscle cell fate commitment | biological_process |
| GO:0007520 | myoblast fusion | biological_process |
| GO:0045214 | sarcomere organization | biological_process |
| GO:0060035 | notochord cell development | biological_process |
| GO:0042383 | sarcolemma | cellular_component |
| GO:0000139 | Golgi membrane | cellular_component |
| GO:0005901 | caveola | cellular_component |
| id | description |
|---|---|
| K12959 | CAV3; caveolin 3 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU32702 | lncRNA | upstream | 177930 | 15276640 ~ 15278716 (+) | True | G27733 |
| TU32642 | lncRNA | upstream | 349472 | 15106957 ~ 15107174 (+) | True | G27679 |
| XR_004577376.1 | lncRNA | upstream | 576222 | 14876678 ~ 14880424 (+) | True | LOC117596203 |
| XR_004579401.1 | lncRNA | upstream | 606525 | 14813879 ~ 14850121 (+) | True | LOC117598849 |
| TU32379 | lncRNA | upstream | 664024 | 14792411 ~ 14792622 (+) | True | G27450 |
| TU32738 | lncRNA | downstream | 10530 | 15471532 ~ 15471756 (+) | True | G27764 |
| TU32743 | lncRNA | downstream | 28534 | 15489536 ~ 15489764 (+) | True | G27769 |
| TU32973 | lncRNA | downstream | 154022 | 15615024 ~ 15616714 (+) | True | G27979 |
| TU33046 | lncRNA | downstream | 313374 | 15774376 ~ 15775849 (+) | True | G28040 |
| TU33047 | lncRNA | downstream | 315896 | 15776898 ~ 15778600 (+) | True | G28041 |
| XM_026919013.2 | mRNA | upstream | 3519 | 15451434 ~ 15453127 (+) | True | LOC113529636 |
| XM_026923867.2 | mRNA | upstream | 10476 | 15441220 ~ 15446170 (+) | True | gpr61l |
| XM_026928781.2 | mRNA | upstream | 16318 | 15432270 ~ 15440328 (+) | False | parp3 |
| XM_034300687.1 | mRNA | upstream | 16318 | 15432894 ~ 15440328 (+) | True | parp3 |
| XM_026929918.2 | mRNA | upstream | 29446 | 15387228 ~ 15427200 (+) | True | grm2a |
| XM_026936877.2 | mRNA | downstream | 273842 | 15734844 ~ 15749493 (+) | True | hemk1 |
| XM_026927452.2 | mRNA | downstream | 327624 | 15788626 ~ 15790439 (+) | True | LOC113534559 |
| XM_026923932.2 | mRNA | downstream | 426171 | 15887173 ~ 15891814 (+) | True | LOC113532530 |
| XM_026915455.2 | mRNA | downstream | 532017 | 15993019 ~ 16010839 (+) | True | LOC113527532 |
| XM_026915463.2 | mRNA | downstream | 532018 | 15993020 ~ 16010839 (+) | False | LOC113527532 |
| XR_004580083.1 | other | upstream | 162292 | 15278827 ~ 15294354 (+) | False | fancd2 |
| trnaf-gaa_15 | other | upstream | 264990 | 15191584 ~ 15191656 (+) | True | trnaf-gaa_15 |
| XR_004577012.1 | other | upstream | 1955350 | 13498298 ~ 13501296 (+) | False | tshba |
| XR_004577010.1 | other | upstream | 1957281 | 13496082 ~ 13499365 (+) | False | tshba |
| TU33403 | other | downstream | 720316 | 16181318 ~ 16182303 (+) | False | mustn1a |
| TU34871 | other | downstream | 3313768 | 18774770 ~ 18826920 (+) | False | G29569 |
| trnai-aau | other | downstream | 3356400 | 18817402 ~ 18817475 (+) | True | trnai-aau |
| TU35395 | other | downstream | 4073439 | 19534441 ~ 19537014 (+) | False | smx5 |
| XR_003403752.1 | other | downstream | 4649128 | 20110130 ~ 20110225 (+) | True | LOC113537321 |
