RNA id: XM_026924048.2


Basic Information

Item Value
RNA id XM_026924048.2
length 2241
RNA type mRNA
GC content 0.42
exon number 14
gene id znf326
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 18083721 ~ 18090316 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTGTGTTGGATTGGGAAGGAGccagcagtgcattgtgggattcaAGTGAAAGAAAATCTGCTCTTTTACTTTCCTGATTGTGTTGAATATTGCTGTTTATTTAGCTGTTGTTACCGTCTGATGAGTTCAATGCCTCTGCCTTATTGggctttttgatttttttactgTTTGGCTAGCTAAGCAGCATCCTTAACTCTTATAAAGCCCTCCTGatCAATATATACTTGATGCAAGGTTTAAGGATAATGATGTCTGGTGATTCAAGAGAAAAGATCTCTGAAATTGCTCCAAGCTCATTTGAAGAGTCCTATGGTCTTTTTCAAAAATATGCAGATGGAGCGTCATCATTATTGTCAACACCTAAGGATGCAGAGAAGTGTGACAGTTGGCAACAGTTCAGATTGTTCCCATCCAAATCGTCTGAGATAAActATGGTTCTTATGAATTCTTTGGTCTTGGAGCCACAAATGCTGGACGTGATGGAAGTTCCTGTGATGGCACACAAACTGCTGTTCTGATCGATGATGTGCTGGTAGACTGCCGTTTACCTTATCTAGGTTCCTCTAGGAGGTCCAGATCACCATTTTCAGACAGTGATAGCAGTCAGTACACCTCCTTCAGCGATATCTCAGGCTCGTCCACTTTATTTGACTCACCGTACACGAGGCCTAGGCCCATTGGCTCGCGTGGGAGAGGAGGAGATACTGCTGCAGTGTGTAGAGCGAAAAGCAGAGGGATTTTCAGGTCGAGAGGTGCCGTTAACATCCAGAGCTTTTATTCAAACATGGCGACACCAGCATCTCGTGGCACAAAGCGGATGCTGATGGCTCCAGTCCCTCCGAGCAAGTTTGCCAAGAAGCAGAGGGTTGAAATGAGCATCAGGGCAGGCCTGAATTTTGCAAAGgaCAGTCATATTTCCTCTGATGGAAAGGACATGAAGGGAAAAGAAGCTGTGGAGGAGAAGCGTGTTAGAGTCCGAGAGAAACGAAGACGTAGACGAGAGAAGAACTGTGAGAAATATGGAGATAAGCACAGATTAGCTTTTACATGTGCCTTTTGTAAATTTCGCACATTTGAAGACAAAGACATTGAAAAGCATTTTGGAAGCACATATCACCATGAAACACTTGACTACATTCGACGACAGGCCAAGTTTGATGACCGAGTCATTAGCTTTCTCCACGACTGTATGGTGCACAAGTTTCGTAAGACAGTGTCTGCTTTGTGCAAGTTACACAGTCTTTCAGACCAGAAAGCAAACCAGAAAGTCATGGAAGGGGTGACTGAGGATGACTACATGAGGAAGGTGGAGGTGGTGCACTGTATGGCCTGCAACATTTACATTCCTGCTGTTATTACTTCTGTCCAGCAGCATCGCCGTTCCCCTCAACACCTAAAATCCAAAGTGGTGTACAAAGAGCAGCTGAAACGGGAGAGTGTGCTGACGGCAAAAGccataataaataatgacagtGTTAAAATTCGCTATGAGAAATACATCAAGGGAGAAGACCCTTTTGTAATGGATGCTAAAGAAGACACTAGCTCAGATTTGTCTGAACCTGAGGACgataaaatggaaaatgatgtttaaaaatgacCGTCCTCTGATGCTTGATATACACGTGTTCATTCAATCCATGTGATGTCATCCAACATTAGGAACTCTAAAGGCATCAGATAGTGTTCTTCCTTTACAAGTTGAGTTTGTAGCAAATTGTGCAGTTGGAGATGTTAATGATTTTCAGTTCTGCTTTAATGGCAGAATTACAGGTGTTGATACATACAATATTGGGATAGAGATGGTTACTGTGTTAAGTATTGTATACTTGGAgaattatgtatgtgtgtgtgagattgtgtgtgggGCAATGCATGCATGCCATGTAATTTCTCATGTCATACTTTGtatctctcttctttcttcctttgctAGTTTCCAGTCCCTCTACCCTGTATTGGTCACCCACTTGCAAGTGCTGTGCCATTTCTGAGAAACCTTTGAATATGGCTTTCAAATGCTTTGTGTCCCTCATGTTAATCAATGATCTGTTGTATGTCCACTGTACTGAaagtttttttcctcctcatcatcctgactcattcattcactcattacTCTTTTATGTGTATCTTTGCAAAACAGAAATTTAGTATAAAACTGTACAAGCCAGATTTGTTGAATTGCCTGTATAtaagttatatataaaatatagatgaaaaaaataaaaggcttGAA

Function

GO:

id name namespace
GO:0032784 regulation of DNA-templated transcription, elongation biological_process
GO:0008380 RNA splicing biological_process
GO:0005681 spliceosomal complex cellular_component
GO:0044609 DBIRD complex cellular_component
GO:0000993 RNA polymerase II complex binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34503 lncRNA downstream 240901 17784475 ~ 17842820 (-) False G29237
TU34502 lncRNA downstream 240901 17839562 ~ 17842820 (-) True G29237
TU34488 lncRNA downstream 369356 17700761 ~ 17714365 (-) True G29223
TU34475 lncRNA downstream 445704 17637327 ~ 17638017 (-) True G29213
TU34442 lncRNA downstream 554517 17472330 ~ 17529204 (-) True si:dkey-44g17.6
TU34596 lncRNA upstream 57912 18148228 ~ 18148749 (-) False zgc:153916
TU34718 lncRNA upstream 362152 18452468 ~ 18452976 (-) True G29439
TU34829 lncRNA upstream 524041 18614357 ~ 18614724 (-) True G29541
TU34830 lncRNA upstream 524553 18614869 ~ 18615874 (-) True G29542
TU34839 lncRNA upstream 543762 18634078 ~ 18634357 (-) True G29551
XM_034312426.1 mRNA downstream 288370 17794638 ~ 17795351 (-) True LOC117599332
XM_026917624.2 mRNA downstream 427511 17637150 ~ 17656210 (-) False brdt
XM_026917633.2 mRNA downstream 427511 17637150 ~ 17656210 (-) False brdt
XM_026917615.2 mRNA downstream 427511 17637150 ~ 17656210 (-) True brdt
XM_026917640.2 mRNA downstream 427513 17637150 ~ 17656208 (-) False brdt
XM_034314495.1 mRNA upstream 3851 18094167 ~ 18106279 (-) False lrrc8db
XM_026920117.2 mRNA upstream 3851 18094167 ~ 18106279 (-) True lrrc8db
XM_026920109.2 mRNA upstream 3851 18094167 ~ 18103910 (-) False lrrc8db
XM_026920125.2 mRNA upstream 3851 18094167 ~ 18102527 (-) False lrrc8db
XM_026920134.2 mRNA upstream 3851 18094167 ~ 18099694 (-) False lrrc8db
TU34546 other downstream 10812 18070987 ~ 18072909 (-) True G29279
TU34529 other downstream 134003 17949157 ~ 17949718 (-) True G29263
XR_004577384.1 other downstream 554406 17513712 ~ 17529315 (-) False si:dkey-44g17.6
TU34409 other downstream 803548 17272955 ~ 17280173 (-) True G29158
TU32920 other downstream 2614492 15461950 ~ 15469229 (-) False oxtr
trnae-cuc_6 other upstream 486908 18577224 ~ 18577295 (-) True trnae-cuc_6
TU34886 other upstream 703716 18794032 ~ 18806750 (-) False LOC113537624
trnag-ucc other upstream 725943 18816259 ~ 18816330 (-) True trnag-ucc
trnap-ugg other upstream 726811 18817127 ~ 18817198 (-) True trnap-ugg
trnap-ugg_1 other upstream 1290125 19380441 ~ 19380512 (-) True trnap-ugg_1

Expression Profile