RNA id: XM_026924123.2


Basic Information

Item Value
RNA id XM_026924123.2
length 3452
RNA type mRNA
GC content 0.46
exon number 9
gene id p4htm
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16259432 ~ 16268579 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGCAATGGCGGCTCATCTCCAGGCAGGGCTTCTCTGCGCCGGGGTCAGCTGTAAAGGTCGTTACGAGCGAGTAACAGGAGCGAAACACTTGACCAGATGTCCTAAACTGCACAATGGGAAGTGTTAAAGGACTAACTTCAGTAATAGCATCATGGCTGGCGTCCGGCTGGATCTGAATCCCGGGAGACGGAGCTGCGCAGTGCCGCTGGTGCCGGAGCTCTGAGAGCGTGTGTGCGGTAGAAACACTGACGAGAGCGCGCTGCTGCTGTGAGAGCAAGCTTTCAGCTCGGCTTAGCCGCTACTCAGACATTAGCTGCTCGAAAATAAACTTATGCTTAACCTCTAATACGTTGACATGTCGTTGACACCCAGTGTGACGAGCTGCTTAGTAATTTTATCTAGAAGGTTAGTTAGGCGGCTACGTTGACCGTGACGAATGTTATGTTTTCATGCGTGAACATTTCGCTGTCATTGCAGCGTCCCATAAACCACAGTCTGTGCTCTACCTGCTCTGTGGAGAATCCGCTGAACCGACCAGCTGACGGActttcactgactcactcagtCGCCGGGAGTCAGGCACAATGACGGAAGCCGAGGGCCGGGTGCACGAGGATGGCAGCGCGCGCTCGTCATTTCATCCGCCGCTGTCACACCGAGAGCGATTCCCGGTGCAGAAGAACAATGTCTGTTCACGATCATACTTTGTAGTGGTCATGGTTTTCTTCCACGTCTACATCCTTAATGTCATTGCCCTGTTACTGTACGTGCATTACAACACCGGCGCTGACGCGGGCGCCTCCTCCAGCAGAGAGTTCAGCAGCCGGAGCCGCGGTCCTGAGGCACCAGCAGAGCAGCCGGCTGCTCACACTCCCCTTCCGCGCATCGAGGGAATACGGGTTGGTCATGTGCAAAAAGTGTCTCTGGTGCCAGGAAAAGTACATGAGATGAAGACCCTCAGTCTGAAGCCTCTGCTCTTTGaaattCCTGGTTTCCTctctgagagagagtgtgcagtgGTGATGCGTCTGGCTCAGCTGAAGGGTCTGGTGGAAAGTCAAGTCATGGTGCCTGAGGGACAGGAAGAGCTCAGCCAGCAGCTAAACCTCAGCGCTGAAGAGATCTTCCATTTGCTTGACCTCAATCAGGATGGCCAGCTGCAGCCACAtgagATTTTAACACATTCCAGAGTGAGAGATGGTATATGGCTGACTCCTGAGAACCTCAGAGAGATCTACGCTGGCCTCAAGGTGGACAAGGATGGTAACGGTCTCTTGAGTGTAGAGGAGTTTGGGCAGCTGAGCAGTGACGCATTCCAGCGCTTCCTACACCAACGGGGGGTGAACAGGAACCAGTTGGTGAGGAACAGCAGACACACATGGCTCTACCAGGGTCAGGGAGCACACCAGGTCCTCAGAGATCTCCGCAACAGGGTCACACGTTTAACAAGGCTTCCATCTGCATTGGTGGAGTTGAGTGAACCTCTTCAGGTGGTGCGTTATGAGCAAGGTGGTCATTACCATGCTCATCATGACAGCGGGCCAGTTTACCCTGAgacaacctgcacacacactcacctcactgTCAACTCCTCCTCGCCGTTCCAGACTTCCTGCAGgtACATTACTGTACTGTTTTACCTGAACACAGTAGAGGAAGGAGGGGAAACCACTTTTCCTGTAGCAGACAACAGAACCTATGATGAAGTGgCTCTCATACAAGACGATGTTGATTTGTTGGACACGAGGAAGCACTGTGATAAAGGAAACCTGAGAGTGAAGCCCACAATGGGCAAAGCAGTGTTCTGGTACAACTATCTGTCTGATGGAAAAGGCTGGGTGGGTGAACAGGATGAGTATGCACTACATGGGGGCTGTGTTGTCACTCGAGGGGTAAAATGGATTGCCAACAACTGGATCAATGTTGACCCAGACTACCAACGGCAAGCCCGGTACGAGCAGCTCATGTCTCAGCAGCCGGAATCTCAGGAgcagcagaacacagacacacaccaggACCTGTAACTACATACATGTATTTCACAAGACTTGCATTACACATGCATATGCAGGtccacaaacacatacacatgaacATGCGTAGCATGCACACACCAAGACAtgcaaaagcacatacagaaaCACTGTGCTGGAACATGCAGATACACAAACAATCATATGTATGGatgcacatacatatatgtatattagaATGACTTATTGGGACACAGGGATACAACTTTAATACTTGCACGTGTGGTACATGGTACTCTGTACAGATACAGAGTATTTCGTTTATTTTACTAATATTTATGAACACTTCTAAAATTATGTTATTGGTAGTGTTATTGCAGCTGCTCTGTatgagcacagagagagacgagagagacaGGTTGAGCACAGCAGCCACTGAAAATAGAGAGACAGGGCTTACTGTCTGGTCATAGAAACTGAAACTAGCTCATTTCTGACacagttttttaaatcttgtgtCAGTGCTCACCAAATCTAGTTTTTTCCCCAATGATTATCACCTAATCATTACGTTGCTAAAAATCtatattggatttttttcataatgcCCAGCTTTATGTAGATACACAAACctgtaaacataaacatatacactGTGCATATTCATGCAGGCATAATGCATGcttattaggggtgtaacgatatgGCATATCGTATCATTCGATATGAGGCTCTTGATTTGATACGTCTGCATATCAAACAATACATTCAATAGACTGCATAATATAGGCTAAATAAGCCTAATCTCCTTCAAGCACGCCCTTTTTCATGAGTCAGTATGCTAGCTGATTGGTGTACTAGCATATTAGCTTGAGAAAAACTTGAGTCACACCAGTGAAAGCTTAGCCATGTTTAATTACGTTacattctaatgcacagcttttgttaTATGCTGCTAAGATTCTGAATGGATCACACAATCACTGTGTCAAGTttcaattattgtacttttataatatCAAATGTTTTAGTCAATTGAAAATGGGAACCTAAGGTACATATACAGACAATGCTTATTATTGCTGTATCAAAAATATCTCATACTgattttgaattttgtgtattgttacacccctaatgctTATATGCATGTAGAAATGAATCATATGATTCATGAACGAAGAGGTGGAGCTGAGCTTTATGTGCTGGAAAATAACAGGATCTCAGCTATTAGTTGTTTGTTCTGTAAAGTTAATTTCTTCAGAACAAGTCATCACCAGCGTTCACTATACCAGTGGTGGCTCgtccataggggcaggtgggGAAAAGCTTAATCATATATATCTGCCATTCAACAAACTTTAATCATGATAGTCCTGATTCACAAtgccatacattttaaattcagctgaaatactaattacctcttttcaGTGACCAacgatattaaaaaaatgttgctatttgatagatacagtc

Function

GO: NA

KEGG:

id description
K06711 PH-4; hypoxia-inducible factor prolyl 4-hydroxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33361 lncRNA upstream 104188 16154986 ~ 16155244 (+) True G28287
TU33182 lncRNA upstream 136292 16122896 ~ 16123140 (+) True G28162
TU33180 lncRNA upstream 137100 16121977 ~ 16122332 (+) True G28160
TU33176 lncRNA upstream 153160 16106043 ~ 16106272 (+) True G28156
TU33170 lncRNA upstream 174464 16083289 ~ 16084968 (+) False slc2a11a
TU33449 lncRNA downstream 130 16268709 ~ 16269552 (+) True G28361
TU33490 lncRNA downstream 64872 16333451 ~ 16334652 (+) True G28402
TU33492 lncRNA downstream 67613 16336192 ~ 16336694 (+) True G28404
TU33493 lncRNA downstream 77066 16345645 ~ 16346086 (+) True G28405
TU33501 lncRNA downstream 89503 16358082 ~ 16361347 (+) True G28410
XM_026924135.2 mRNA upstream 1001 16245307 ~ 16258431 (+) True myhb
XM_026929639.2 mRNA upstream 19490 16234025 ~ 16239942 (+) True arpc4
XM_026919974.2 mRNA upstream 26094 16231892 ~ 16233338 (+) True LOC113530143
XM_026916248.2 mRNA upstream 28650 16227005 ~ 16230782 (+) True LOC113527941
XM_026916171.2 mRNA upstream 28652 16227005 ~ 16230780 (+) False LOC113527941
XM_026928817.2 mRNA downstream 15374 16283953 ~ 16288642 (+) True kbtbd12
XM_026927266.2 mRNA downstream 32689 16301268 ~ 16302456 (+) True akap14
XM_026931267.2 mRNA downstream 37482 16306061 ~ 16313244 (+) False c2h1orf159
XM_034310280.1 mRNA downstream 37524 16306103 ~ 16313244 (+) False c2h1orf159
XM_026931429.2 mRNA downstream 37561 16306140 ~ 16313244 (+) True c2h1orf159
TU33403 other upstream 77129 16181318 ~ 16182303 (+) False mustn1a
XR_004580083.1 other upstream 965078 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 1067776 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 2758136 13498298 ~ 13501296 (+) False tshba
XR_004577013.1 other upstream 2760067 13496154 ~ 13499365 (+) False tshba
TU34871 other downstream 2506191 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 2548823 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 3265862 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 3841551 20110130 ~ 20110225 (+) True LOC113537321
TU36319 other downstream 4746279 21014858 ~ 21017447 (+) False insl5a

Expression Profile