RNA id: XM_034311801.1


Basic Information

Item Value
RNA id XM_034311801.1
length 1907
RNA type mRNA
GC content 0.48
exon number 20
gene id LOC113533199
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 13931140 ~ 14018732 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaaaagtgtgttgtttTGGACGTAACAGAGCTCGTTTGGAGTTTCCGCTGAGTGAAAGCGCTCTTCACTTCACCTGAGAGAGTGTATTATCGTGGCAGACTGTTCAGGGTGCGGTGTGGGACGCAGCGCGGCTCTGAGTGACTGGCGGCTCCTCTCCTCAGGCAGAGCGCGAGAGCTGACACATGGACGCTGTGGCGCGGGGCGGCGCGTCACACAGGTAGCGCGCTGTGCTCCCGCGCGCTCTGCTCCCGCGCGCTCCACCACTTTACCCAGTCCAGTCGCAGTCCCGCCTGGACCACCGCTGCGTTTCCCCTCACTAGATTCAGGACAAACACAGTGTCGGATGGAAAACTGAAAACTCCtcattttgtttgaaaaaaaatatccaacaTCTCGAGCGTCACGATGGCCTCTATTGGGGACTTCGACCCGCTCCATTCTACAGTACCAGCAACTAAGATTGAAGTTACTGTCTCGTGCAGGAATCTACTGGACATGGACACGTTTTCTAAATCAGATCCTGtTGTCGTGTTGTACATACAAGGCATAGGAACAAAAGAATGGAGAGAGTATGGCAGAACGGAGGTGATTGACAACACACTGAATCCAGACTTTGTACGGAAATTTGTTCTGGATTTCTTCTTTGAGGAGAAGCAGAATCTTCGGTTTGATGTGTACAATGTGGACACACGAAGTTCAAACATCTCAAAACATAAAGATTTCCTGGGTCAGACATTTTGCACACTTGGAGAGATTATTGGCTCGACAGGCAGTCGCATGGAGAGAACGCTATCCGGGATTCCAGGGAAGAAGTGTGGCACCATCATCTTAACCGCTGAGGAACTCAGCAACTGCAGGGATATTGCTACTATGCAGCTGTGTGCCAATAAACTGGACAAGAAGGACTTCTTCGGCAAGTCTGATCCTTTCTTGGTGTTCTACCGCAGTAACGAGGATGGAACGTTTACTATCTGTCATAAGACAGAGGTGATTAAGAACACTCTGAACCCAGTGTGGCAGCCATTCACCATCCCTGTGCGTGCGCTGTGTAATGGTGACTATGACAGAACCGTTAAGGTAGATGTGTATGACTGGGATCGAGATGGAAGTCATGACTTTATTGGCGAGTTCACCACTAGCTACAGAGAGCTGTCCCGAGGTCAGAGCCAGTTTAATGTGTATGAGGTTTTAAAtccaaaaaagaaaggaaagaaaaagaaatatgtcaATTCTGGCACAgTGACATTGCTTTCCTTTAAAGTTGAATCTGAATACACATTTGTAGACTTCATCAGAGGAGGGACACAGCTCAACTTCACTGTGGCCATAGATTTCACAGCATCAAATGGTAACCCGGCTCAGCCAACTTCCCTGCATTACATGAGTCCATATCAGATGAACACCTACGCTATGGCATTGAAGGCAGTGGGAGAGATTATTCAGGACTATGACAGTGACAAGCTCTTCCCAGCATATGGATTTGGAGCCAAACTGCCCCCCGATGGCAAAATCTCCCATGCCTTTCCTCTGAATGGTAACAGTGAGGACCCAAACTGTGTGGGGATAGAGGAGGTGCTGGAGGCTTACTTCCAAAGTCTCAGAAAAGTCCAGCTATATGGACCAACCAACTTCGCCCCAGTCATTAACCAGGTAGCAAGTGCAGCGCAGGATGTGACTGATGGCTCCCAGTATTTTGTGCTGTTGATGATCACAGACGGAGTCATTTCAGACATGGTGCAGACAAAAGAAGCTGTTGTCAATGCTTCAGCTCTACCTATGTCCATCATCATTGTGGGTGTGGGTCCAGCTGAGTTTGATGCTGCCATCTGTCACCCACCACTCAAAGCCCCATAGTACCCACTGTCTCATTTACATACACAATTGGATCTCCAGGATCGATACTATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31741 lncRNA upstream 57617 13873315 ~ 13873523 (+) True G26884
TU31732 lncRNA upstream 94793 13834239 ~ 13836347 (+) True G26875
TU31730 lncRNA upstream 105914 13822384 ~ 13825226 (+) True G26873
TU31688 lncRNA upstream 301674 13626481 ~ 13629466 (+) True G26848
TU31582 lncRNA upstream 433411 13490161 ~ 13497729 (+) False tshba
TU32056 lncRNA downstream 157414 14169780 ~ 14172077 (+) True G27164
TU32160 lncRNA downstream 457724 14470090 ~ 14470420 (+) True G27262
TU32167 lncRNA downstream 478414 14490780 ~ 14491136 (+) True G27269
TU32173 lncRNA downstream 483846 14496212 ~ 14496858 (+) True G27275
TU32208 lncRNA downstream 542885 14555251 ~ 14555465 (+) True G27309
XM_026916723.2 mRNA upstream 349 13912064 ~ 13930791 (+) True mtmr14
XM_026916732.2 mRNA upstream 349 13912065 ~ 13930791 (+) False mtmr14
XM_034311762.1 mRNA upstream 66471 13836548 ~ 13864669 (+) False setd5
XM_026918485.2 mRNA downstream 9887 14022253 ~ 14030692 (+) True si:dkey-156n14.3
XM_026925360.2 mRNA downstream 36369 14048735 ~ 14058514 (+) True LOC113533298
XM_026920665.2 mRNA downstream 87841 14100207 ~ 14113930 (+) True aldh1l1
XM_026920681.2 mRNA downstream 87865 14100231 ~ 14113930 (+) False aldh1l1
XM_026920689.2 mRNA downstream 91147 14103513 ~ 14113930 (+) False aldh1l1
XR_004577012.1 other upstream 429844 13498298 ~ 13501296 (+) False tshba
XR_004577009.1 other upstream 431775 13495857 ~ 13499365 (+) False tshba
trnaf-gaa_15 other downstream 1179218 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004580083.1 other downstream 1266461 15278827 ~ 15294354 (+) False fancd2
TU33403 other downstream 2168952 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 4762404 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 4805036 18817402 ~ 18817475 (+) True trnai-aau

Expression Profile