RNA id: XM_026925360.2


Basic Information

Item Value
RNA id XM_026925360.2
length 3292
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC113533298
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 14048735 ~ 14058514 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCCGCGTATCTGGCCAGTAGTGTGTAGCAACACCGCGCGGAGGGCTTCAAGGGCAAGTGCCTCAATTCAGCCATTCTTGTACACAGGagtagtgcaaaaaaaaaacaacaacaaaaacaaaaaaccttggATTTATAAACGACTGCTGGAAATAAACGGGTGCAGCCCGGAGCTTTTGGTGTATGTGTGAATCACAGTATGTCTTTCTTGCTGTGAGCAAAAACAACATTCTCATTTTACATGGACTTCATCAATTCGGTGTAGCCTGAGGAAGAGGAATTGACTGTTCACCGAAACAGGAGttgtttataaattttaataaaagggAAAATCTAGGGAATGGTGGATCATTTCTTGTCAGCTGAAGAGAACTTCCTTTCTTACAGTGGCATAGACTCTGCCTCACCTGTGGGGTACCACCTGTCAGATATGGTATCAGACTCGGGGAGCTATAAGGTGATGCCGTCACCATTCTCAGAAGACGACCTCAGTGATGCATCGAGTCTGCGTTCCTGCTCCTCCCCAGATTCCCAAGTCCTAAGCTCAAGCTACGGAAGTACATCAAGTACTGAGAGCCAGGATGGCATCCTCAACTTCCTGCTATCCCATACTTCCCTTGGTGGTGGAGGTGGCAACCATGCCGAGGATAGCACTGTAACCTCAACTCCTCTAGCAGGCATCCCCTGGAACTCACAAAGAGACAGCATGAAGGAAGAGAACTTTGACTTACCAATCTGGTCCCCCTCAAACATGGAGGAGGCACCTGCTGAACCTTTCCAACCCACCCTGGAGGAAATTGAAGAGTTCTTAGAAGAAAACATGAGTGGTTTGGTGTCCCTCAAGCATGAGGGGAACTCACACCTTGGATTGGAGTTGGAGCTGGACCTCGGATTGGGGACAGGAGTGGTGGTCATGGAAGAGATCTCATCTAGGGTGCCAGAGACAAGCACCATTGGATCTCAGCATCATTCTAATCAAACGGTGTCAATGGCTAAGCTTCCATCAAACTTCAGAGTTGATCATGAGACCACAAGCACAGATAGTATTCCAAGTAATCAAGATCCAAGCATGCAGGCAGAGGATGCAATAAAGAAGGAGACCCAAAGTAGACCTGTCTCCACTGAGAACAACACTACCCCAAATGCCAGCAATGATAATAGTGGGATGCCTGTTATTCTTCAAATCCAACCAATTCAGATCAAACAGGAGAATCAGGGCCCCAGTGGGGCTGCAACTCCTCCCTTAACAACTCAGCCCCCCGCCCCAGGCACAGACATCAAAATTGCCCAACTGCTGGTTAACATCCAGGGACAGACCTTTGCATTAGTCCCTCAGTTTCTACCTTCTACCCCCAATTCATCTTCACCATCTACCAGGCTCAGTGGCACATCTAAATTTGTGCGGATAGCACCTGTGCCCATCGCAGCAAAACCTGTGGGTAGTGGAGGGGATGGTCTTGGTGTGGGTGGGTTCCAAGCTGGTCTCCTAGTCGGAGGAGCACAGAAGTTCCAGAAGAATCCAGTGGCAGATCTCATCAAAATGCACAAGTGCAACTTTCCAGGCTGTGCCAAGATGTACACCAAGAGTAGCCATCTTAAAGCTCACCTGAGGAGACATACTGGAGAGAAGCCATTTGCCTGTAACTGGCCTGGCTGTGTAtggaaGTTTTCCCGCTCGGATGAGCTGTCCCGTCACCGGCGGTCCCATTCTGGGGTGAAGCCGTACCAGTGTCCCGTGTGTGAGAAGAAGTTTGCCCGCAGTGATCACCTATCAAAGCACATCAAAGTCCACCGCTTTCCCAGGAACAGCCGGACAGTCCGCACTGCTGCCTGATCCCACCCCCATTGCACTCACTGAACCACAAAATCACAACGAATTTGGTGTGTGTGAATAGGTGAGAGGAAACTGTTGGAACCGTAAGAAGTATCATGTCTGAGCATTTCTACTTTGCCCTcatatttatagtgttttaaattaaatctcagTGGCAGAGCAAAGGCAAAATGTATTGTTATCTTTGGTGCTACATTCTGTATGGATTACAAAGAAGAGCAGACTGGCATTAATACAGACTGTGCTAATGGGGATCAGTCGATTTGAATAAGCTATGGGGACACTTTCATAAACCACATCATTCTTATGTGAGTGCAGAACGACAATAGAAATGCAAAAAACGAGGACAATGTCGATTGTACATGTTTAATATGTACACCTTCAATCAGTGTTGAAAATCTCATTTTTGCTTTTAAGGCAAGCTGTTTTGTAATAAggtgtttgtatttttattaatgtcgCCTCTTAATGGCTCTGCTGTGTTTTTGGCCTTAGTCAACCACAAAGCTCTTATCTCAGGTCTGACTTGGGTGCTGGGGACGCTGTAAACCCAGTCTCAGCATTTCAGAACAACTCATGAAGTTCATGAAGGAATGTGACCCAATCAAACAACTTAGAGTAATAACTAAGAGTGTTAATCATTTATACTCGTAGTTAGCACTTAGCAGCAGTGACACTAAATGAGATTCACTTGATATTTGTAAGCACATGGAGCATTTGGACCCAAGTgtcttctctttctgttttattattttatttcctgtgaCACAGAATATGCCTCCAAACTCCAGTGTGTTACTGGATTACCTACAGATCATTGTGATACTAATGCTGGTGTTACATCTGTCTACCCCACTCCCCCGCACCTTCACACAAACAGGAGCATGAACATGAAACACTGTAGCTGTTACTTTCAGTGAACCCAAAGTGGTCAAGATAAAATGGTTATGTTACAGTTTGAGGATTACATACTGTAACTTTACAACGATTACACACCAGCATGTTTGCGTTTGTTCATGTTTGTTAGGAAAGTTGGGTAAGTAGTGTGGACATACCAAGGTGCTTGTGGCTGAAGTAGGCAAAACCACAGTAGTGTtggtgccatgttttatttagtgtttattaatattttctggGCACTTCTGGAAGTGGGGAGACTTACTTCCTTATCTGTTTCATGTGTGTTCTCTTTCTGATCAAGGGGCCCACTGTACATATATAATGGCATTCCTTTCATTCATAGAATGAATTTTATGAATACTTGTTAACACACAGGTGTTTTTAGCCACATCCTAtgaatgtatgtaaataaaaccTGTATGATTTTAAGGGTGGGGAGGTTGAGAGGCAAATTAAACAAAGGGGAATTGTTGTTTGTGGTTAAGATTTTTAGTGTAATCCTAAATGTGTACATAAGTGTTTCCATacatataagtatataaatatatatatttttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU31741 lncRNA upstream 175212 13873315 ~ 13873523 (+) True G26884
TU31732 lncRNA upstream 212388 13834239 ~ 13836347 (+) True G26875
TU31730 lncRNA upstream 223509 13822384 ~ 13825226 (+) True G26873
TU31688 lncRNA upstream 419269 13626481 ~ 13629466 (+) True G26848
TU31582 lncRNA upstream 551006 13490161 ~ 13497729 (+) False tshba
TU32056 lncRNA downstream 111266 14169780 ~ 14172077 (+) True G27164
TU32160 lncRNA downstream 411576 14470090 ~ 14470420 (+) True G27262
TU32167 lncRNA downstream 432266 14490780 ~ 14491136 (+) True G27269
TU32173 lncRNA downstream 437698 14496212 ~ 14496858 (+) True G27275
TU32208 lncRNA downstream 496737 14555251 ~ 14555465 (+) True G27309
XM_026918485.2 mRNA upstream 18043 14022253 ~ 14030692 (+) True si:dkey-156n14.3
XM_034311785.1 mRNA upstream 30003 13931140 ~ 14018732 (+) False LOC113533199
XM_026925269.2 mRNA upstream 31135 13931140 ~ 14017600 (+) True LOC113533199
XM_034311792.1 mRNA upstream 31135 13931140 ~ 14017600 (+) False LOC113533199
XM_026925185.2 mRNA upstream 31135 13957532 ~ 14017600 (+) False LOC113533199
XM_026920665.2 mRNA downstream 41693 14100207 ~ 14113930 (+) True aldh1l1
XM_026920681.2 mRNA downstream 41717 14100231 ~ 14113930 (+) False aldh1l1
XM_026920689.2 mRNA downstream 44999 14103513 ~ 14113930 (+) False aldh1l1
XM_026920673.2 mRNA downstream 45052 14103566 ~ 14113930 (+) False aldh1l1
XM_026922220.2 mRNA downstream 59469 14117983 ~ 14129183 (+) True LOC113531458
XR_004577012.1 other upstream 547439 13498298 ~ 13501296 (+) False tshba
XR_004577009.1 other upstream 549370 13495857 ~ 13499365 (+) False tshba
trnaf-gaa_15 other downstream 1133070 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004580083.1 other downstream 1220313 15278827 ~ 15294354 (+) False fancd2
TU33403 other downstream 2122804 16181318 ~ 16182303 (+) False mustn1a
TU34871 other downstream 4716256 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 4758888 18817402 ~ 18817475 (+) True trnai-aau

Expression Profile