RNA id: XM_026925523.2


Basic Information

Item Value
RNA id XM_026925523.2
length 1706
RNA type mRNA
GC content 0.54
exon number 3
gene id barhl2
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 17918400 ~ 17922819 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTAGGAAATCATTGTAGAGCATCAACTGGGGAGGAtttctagcaaaaaaaaagagggtgaGTTGATGTCGAGGAGTTAGAAAGCTCAGAAAGCGCAACTtttgggagagagaaagagagcgagatatagagagagacagatcgagagagagagagagagagagagagagagaaaataaagttcAGGCACCAGTGCAAAAGGACGTGGAGCTACACAAGACCCAGCTGCTTTTTACAGATTTCATACTGAAAGAAAGCGCATCCTGGGAGACTTCATGTGCATCACAATCTTCTCCACATCTTAACAAACTTGCaaggatttttgtttttccgGCTTGTTTTCTGCGTTTAGCTGTGTGCTGCGTTAAGCTTCAGAATCACTCTGATGCGTTTAATTGGCGAGGATTAATAAATAGACTgcgcacttttttttttgtttgtttctgaagCATCAGCTCGCGTTTAATTCCGTCTAAATTGCACGCGCCataattcatcatcatcatcttcttcttcttcttctttttaatgaattgaTGGAGAAGAAACTTCCTGTTATGCAGACTCCTTAAACCAACAtcggtttttctttttctttttttttttatgttttaatgtcatggaaggATCCAGCGCGTCTAGTTTTGGAATAGACACCATTTTATCTTCCGCCGGTTCCTGCAGCTCGGCGCTCGCGATGATGGACGGAGACTTCCGGGCGGCGGATTTCCGGAGCCGCGCGACACCTTCGCCCTGCTCGGATGTAGACGCGGGCGCGAGGAGCCCTTCGTCCCCGATCTCCGTCACTGCGGAGCCTCCTGAGCCGCATCCGGTGCAAGACggccttcatcatcatctccatcatcaccattatcatcCGGTGGCCCAAAATCCGGCCGCGTGCGCCCCGCGGACCGCCACCTCCTCTTTTTTGATCAAGGACATTCTGGGCGACGGGAAGCCGCTGGCAGCGTGTGCGCCCTACAGCGCGAGCCTCGCACCCTCCCCGCAGCACCAGCGTCAGCATCATCACACTCCCAAAGCAGAGAGCGCGGACTGTCTCACCCCAAAAGCCGAGCACGACGAGCACGGAGgcaaagcagaaaaaagagaCGACATTCACAACGACGCCAAATGCAACGgaACAAAAGAAGAGGGTGATCGGGAAATCTCGAGCTCCAGAGACAGTCCGCCTGTACGCGCTAAAAAGCCGCGGAAAGCGCGAACAGCCTTTTCGGATCATCAGCTGAACCAACTGGAGCGCAGCTTCGAGCGCCAGAAGTACCTGAGCGTGCAGGACCGCATGGACCTGGCAGCAGCGCTCAACCTCACCGACACACAGGTCAAGACCTGGTACCAGAACCGACGGACGAAGTGGAAGCGGCAGACGGCGGTGGGACTGGAGCTGCTGGCGGAAGCGGGCAGTTACTCGGCGCTGCAGCGGATGTTTCCGTCCCCGTATTTCTACCCGCCGGGGCTGCTCGGCTCTGTGGACGGcacggcggcggcggcggcggcggcagcAGCGATGTACAGCAGCGTTTACCGGAACAGCGCACCGGCGCCGCATCCCGCAGCCACTCTGCACAGACCGCTCGTGCCGCGCGTGCTAATTCACGGGCTGGGCGCGAGCGGGCAACCGGCGCTCAACCCGCTGGGGAACCCTGTTCCTGGCACGCCGCATCcccggtaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09360 BARHL; BarH-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34336 lncRNA upstream 153627 17694754 ~ 17764773 (+) True G29106
TU34335 lncRNA upstream 229665 17683821 ~ 17688735 (+) True G29105
TU34246 lncRNA upstream 383049 17530575 ~ 17535351 (+) True G29036
TU34247 lncRNA upstream 386224 17530575 ~ 17532176 (+) False G29036
TU34197 lncRNA upstream 492077 17423821 ~ 17426323 (+) True G28997
TU34548 lncRNA downstream 160900 18083719 ~ 18085644 (+) True G29281
XR_003403713.2 lncRNA downstream 435383 18358202 ~ 18360035 (+) True LOC113536874
XR_003403164.2 lncRNA downstream 542065 18464884 ~ 18467320 (+) False LOC113530672
XR_004580300.1 lncRNA downstream 542067 18464886 ~ 18467320 (+) True LOC113530672
TU34849 lncRNA downstream 765834 18688653 ~ 18691007 (+) True G29561
XM_026923587.2 mRNA upstream 77418 17804545 ~ 17840982 (+) True znf644b
XM_026913172.2 mRNA upstream 151120 17666584 ~ 17767280 (+) True tgfbr3
XM_026917816.2 mRNA upstream 450242 17465581 ~ 17468158 (+) True gadd45ab
XM_026917748.2 mRNA upstream 480501 17433348 ~ 17437899 (+) True znf648
XM_026917757.2 mRNA upstream 480501 17433426 ~ 17437899 (+) False znf648
XM_026923802.2 mRNA downstream 216236 18139055 ~ 18146917 (+) True LOC113532395
XM_034311072.1 mRNA downstream 216236 18139055 ~ 18146917 (+) False LOC113532395
XM_026923793.2 mRNA downstream 216422 18139241 ~ 18146917 (+) False LOC113532395
XM_034300733.1 mRNA downstream 375556 18298375 ~ 18411183 (+) False LOC113536767
XM_026930929.2 mRNA downstream 375563 18298382 ~ 18413955 (+) True LOC113536767
TU33403 other upstream 1736097 16181318 ~ 16182303 (+) False mustn1a
XR_004580083.1 other upstream 2624046 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 2726744 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 4417104 13498298 ~ 13501296 (+) False tshba
XR_004577013.1 other upstream 4419035 13496154 ~ 13499365 (+) False tshba
TU34871 other downstream 851951 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 894583 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 1611622 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 2187311 20110130 ~ 20110225 (+) True LOC113537321
TU36319 other downstream 3092039 21014858 ~ 21017447 (+) False insl5a

Expression Profile