RNA id: XM_034299941.1


Basic Information

Item Value
RNA id XM_034299941.1
length 4463
RNA type mRNA
GC content 0.46
exon number 16
gene id LOC113533429
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 11263130 ~ 11312925 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGCTTCTTCCCGTCCTTACCCCTgggcgcgcgcgcgcacacgcgcCTCTCTCCCCGAGCTGCTCGCACCTGGCAGAGGGCGGAGGAGCCCCGGCACGCGCGCCCGcgcctcctctctctcctctccatgCCAGCGCCGCCGCGAACATGGTGCAGAAATCCCGCAACGGCGGGGTTTACCCGGGCCCGCAGACCGAGAAGAAGCTCAAGGTGGGCTTTGTGGGGCTCGAGGCGGCCGCGGCGGATTCGAGTCGTGATGGCGCGCTGCTCATCGCGGCCAGTGACGCGACCAAACGCGGCAGCATCCTGAGCAAGCAACGCTCCGGCATCGCGGGCAAGAAGCCGCCCAAGCGCAACGCCTTCTACCGCCGCCTGCAGAATTTCCTCTACAATGTTCTGGAGAGACCACGAGGCTGGGCATTCATCTATCACGCTTATGTtttcTTGCTGGTGTTCTCCTGTTTGGTCCTATCTGTGTTTTCAACCATCAAGGAATATGAAAAGAGCTCTGAGGATGCCTTGTACATACTGgaaATTGTAACGATTGTCGTGTTTGGAGTTGAATACATCGTAAGAATTTGGTCAGCGGGATGTTGCTGTCGATACCGAGGATGGAGAGGCAGGCTAAAATTTGCTCGAAAGCCTTTTTGTGTAATAGACATCATGGTGCTAATAGCCTCCATCTCAGTGTTGGCAGCCGGCACGCAGGGCAATGTGTTTGCCACCTCAGCCATCAGAAGTCTCCGCTTCCTCCAGATCCTCCGCATGATACGTATGGACCGCCGTGGAGGAACCTGGAAACTGCTGGGGTCTGTTGTCTATGCTCATAGCAAGGAGTTGATCACAGCTTGGTACATTGGCTTCCTGTGTCTTATCCTGGCCTCTTTTCTTGTGTATCTGGCTGAGAAAGAGGACAATGAGATGTTTGCAACTTACGCTGATGCTCTGTGGTGGGGTCTGATCACGCTGACCACAATAGGGTATGGAGATAAGTATCCTATAACATGGAATGGACGTCTTCTTGCAGCAACATTCACCCTCATCGGAGTGTCCTTCTTTGCCTTGCCTGCTGGAATCTTGGGCTCTGGTTTTGCCTTGAAGGTCCAGGAGCAGCATCGGCAGAAACATTTTGAGAAACGACGGAATCCAGCTGCAGGGCTCATTCAGGCAGCCTGGAGAGTGTATGCTACAAATCTGTCTCGCACAGACCTGCAGTCAACCTGGGACTACTATGAGAGAACTGTGTCAGTCCCTATGTACAGactCATTCCCCCCCTTAACCAGCTTGATCTGCTGAGAAATCTGAAGAGCAAATCTGGCCTTTCTTTTAGGAAGGAAGCCCAACCAGAGCCATCCCCAagTCAGAAGGTCAGTCTGAAAGAACGAGTATTCTCCAGCCCGAGAAGCTCGGGAACAAAGGGGAAAAGTTCACCCCAGGGACAGCAGCCTCTGAGACGCTCTCCCAGTGCAGATAACATTGAAGACAGTCCTTCTAAGGTGCCCAAGAGCTTGAGCTTTGGTGACCGCAGTCGTGCTAGACAAGCATTTCGCTTCAAAGGGGCAGCTTCACGCCAAAACTCAGAAGAAGCCAGCCTTCCTGGAGAAGACATTGTTGATGACAATAAGAGCTGCCATTGTGAGTTTGTTCCACAAGATTTAACACCAGGAATTAAAGTTACCATCAGGGCGGTGTGCATTATGCGGTTTATGGTGTCAAAGAGAAAGTTTAAGGAGAGTCTCCGGCCTTATGATGTGATGGATGTTATTGAGCAGTATTCAGCTGGACACCTAGACATGTTGGCCAGGATTAAAAATCTGCAGTCCAGGATAGATATGATATTGGGTCCTCCGGGTCCCACCACTCCCCGCCATAAGAAGTATTCAACCAAGGGAACCAAAGAGTCGCCCCAGTTCTCACCTAGGGTCGACCAGATTGTTGGCAGAGGTGCTCCAATCACAGACAAGGATCGTCCTAAAAGCTCAACAGAAGCAGAAATTGCAGAGGACCCAAGCATGATGGGAAGGCTTCTGAAAGTAGAGAAACAGGTGATGTCAATGGAAAGGAAACTTGATTTCTTGGTGAATGTCTACATCCAGCGAATGGGAATCCCACAGTCTGAGACAGATGCCTACTTTGGTTCTAAAGAGCCTGACCCAGCCCCACCGTACCATAGCCCTATCGAGCATATGGAGAAGTCTGGCTCTATTACCAAGATCATCCGTTCCAACAGCTCAACTGGCCAGAAGAATCTTGATGCTCCTCCATCTGCATGCGTCAACCAGAACAACTGCCCTCCATCCACCTCTTGGCAACCCCATGCCCTTCCTGGACCCCCTCAGTGCTGCAGAGGCAACTCCCCAGTAGGTGATACCTCCTTGGTGCGAATCCCACCTCCACCAACTCATGAGCGCTCCTCCAGTGGACATAATGGCTCCAACCGAGGCTCTCGTGGAAGTGCGGTGGAGGAGGTGAAGCCTGGAGCTCTGTCTCAACAGCAGGCAGGTGCTGATAGTGACACCTCCATCTCCATTCCCTCTGTGGATCACGAGGAGCTTGAGCGCTCCTTCAGCGGCTTCAGTATCTCACAGTCTAAAGAGAACCTAGACTTCCTAAACAACGCATACTTCAGTGGCATGACACGCTGCTCAAAAGTGAGGCCCTACATCGCAGAGGGTGAGTCAGATACAGACTCTGAGCTTTGTGCCCCTTCACCTCATTCTGCCACTGGGGAAGGAGCATACAGTGACAGGGGCTGGTCTGGCCCCAAGTAAATCTGAAAATGAGCTTTCAAAGTTGGATATTCTGCTGGGGGTGGTAACCTCTGAAACCAAACTCAGGCCACATGTGGCAAGAAGCTGTATTTGTTAAAACCATGGTTACTTCTTACAGATACAGATCTGAATTCCATGCCAGAAGCCTGGTAGTAATGCCAACCGCCTAAATGTGGAGCTTTCTGGTACTTAAGAATTTCCTAGACAGGTGGTACTTGTGGCTGTTACCTTTAAAGGTGTCATTCTTCTTTTGAGAGACAAGCATCTGCTGCTCAGTCATTGTGCATCGTTCCTAAAAAATCTAACCAAGAGAAAGGCACAGGAAAAGATAAGtcagcaggaaaaaaatgccATAGTTTGTCTCAACCTTTAGTCACATAGTTCTTCACCCTCATTTTTCCAGCCATTCAGGTTATGTTTGTCTAGTCACACTGTCTTATTACTCTGAGACAGATAACGAGATGGTTTCTTGTTGTCCACATTAGCCCATGGATGCACTTCAAAATATAAACTGCTTTAAAATTGTCCAATATTCAATATCTGCCATCAtgccaaaaattattttttagtaaAATTGTACTCCTATAGAACAAGAAACAATTTACTTATAAAAGGTACAATATTTCAATGTATCAGGTTTCAACCTTTTTAAGTAATCACTGGTTTTAATAATTTGCATGAATTTAGaatatttatacagtttattttatacaaacctatttaaaaagaggaaaataagcTTAATATTTTATGCAGAAGTTTTGTTCTTTTCATAAAGAGAACTTCTGAAGCTATCTATAAATATAATGCATATGAACTATTACCATATATATTGACACATTTAACCATCAAAATGTATAGATGCATAGATCACGTGTAATTTTCACACCAAAAATTCTGTTGTCTggaataaaataattgaatatttgatctattaattttaatatattttaaacaagcTTTTAACAATCTGATATCTTTTTAGTTCATGGACAGTCAGTTCATACATATACTTGTATGCTGTCTTTGCTTTTTCCCAGAACACATTCTAATATAATGTTGCATCAGAGCTTTTATCCATTTGAAGCTGTAAAGTTTCATTAGTTGGCATGATCATTTTTTACTAAACACTAAAGAGGAGTCATCTGTTCTCTTATTGTGATACTGCACACTTCTGAACACAGGTGTACCTACCACAACAGTGCAACGGTCCTGTTGACAGTGCATTCCTTCAcgtatttttccttttttcttcggATGTATGCAACCAACACTAAATCTTTTCTGTGTTACACAaaacatacttctggccatccAGCCCTGTTGCAGGTCAGCCTTCTCAGAGGTAGGTGTgggtgatataaaaaaatataatatcacttaatatcataatattaaGCTAGTTTAAGTAACAGCTGTGGTTATTGTTTTCAAGCTCTATAACAGATCTCACTTATTTTATGAAACACGAACTTGTTCAGTGCTTGAGAAGTCACCCTAAATAGCACTCCCCTAATCACAGGAGAATGTGAATATTGTATTATAATGCAGTAACAACTGGAATCCTCTTTTGGCAATAGGAATATACAGCctggtccataagtatttggacagtgacacaactttcataattttgcctctgtacaccaccacaatggatttgaaatgaagcaatcaagatgtgattgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU29719 lncRNA upstream 28528 11234122 ~ 11234603 (+) True G25110
TU29633 lncRNA upstream 344627 10916056 ~ 10918504 (+) True G25035
TU29576 lncRNA upstream 416006 10821467 ~ 10847125 (+) True G24989
TU29341 lncRNA upstream 772843 10489288 ~ 10490288 (+) True G24759
TU29333 lncRNA upstream 810369 10452249 ~ 10452762 (+) True G24751
XR_004579381.1 lncRNA downstream 12485 11325410 ~ 11327031 (+) True LOC117598838
XR_004579383.1 lncRNA downstream 12967 11325892 ~ 11327031 (+) False LOC117598838
XR_004579382.1 lncRNA downstream 12967 11325892 ~ 11327031 (+) False LOC117598838
TU29983 lncRNA downstream 114474 11427399 ~ 11427789 (+) True G25344
TU29995 lncRNA downstream 129562 11442487 ~ 11444101 (+) True G25355
XM_034312270.1 mRNA upstream 10478 11213345 ~ 11252653 (+) False ralgapb
XM_026930051.2 mRNA downstream 9845 11322770 ~ 11327587 (+) True arfrp1
XM_026922874.2 mRNA downstream 17438 11330363 ~ 11335498 (+) True stmn3
XM_026923552.2 mRNA downstream 40647 11353572 ~ 11357653 (+) True sp7
XM_026926305.2 mRNA downstream 95851 11408776 ~ 11419440 (+) True igsf8
XM_026926314.2 mRNA downstream 95851 11408776 ~ 11419440 (+) False igsf8
TU29627 other upstream 354559 10906200 ~ 10908572 (+) True G25029
XR_003403740.2 other upstream 508509 10754515 ~ 10754622 (+) True LOC113537259
TU29055 other upstream 1064676 10197966 ~ 10198455 (+) True G24500
TU28879 other upstream 1355960 9895245 ~ 9907171 (+) False LOC113530691
XR_004577034.1 other upstream 1666277 9591941 ~ 9596854 (+) False LOC113532547
TU30526 other downstream 891604 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2
TU30617 other downstream 1213245 12526170 ~ 12527491 (+) True G25908
TU31442 other downstream 1953102 13266027 ~ 13331868 (+) False si:dkey-238f9.1
XR_004577014.1 other downstream 2182931 13495856 ~ 13499365 (+) False tshba
XR_004577009.1 other downstream 2182932 13495857 ~ 13499365 (+) False tshba

Expression Profile