RNA id: XM_026925796.2


Basic Information

Item Value
RNA id XM_026925796.2
length 1948
RNA type mRNA
GC content 0.51
exon number 13
gene id mybphb
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 9855971 ~ 9868275 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCTTCCGAGACGCAGTCGAAGGTGCCAAGTTAGCGTGAGGGATCTTTCCTGCGGACAATCATGCCGGCCAAGCCAGCACCCATTAAGAAAGGGGTCAAGGTGGTGAAGAAGGAGGCGCCACCGCCGAAGCCCGAGCCTGCACCCGCGCCACCTCCGGCTGAAGCTCCACCCGCCGAGGCGCCTCCAGCTGAAGCTCCACCCGCCGAGGCGCCTCCAGCTGAAGCCCCACCTGCCGAGGCCCCTGCAGCGGCTCCAGCCGAGGCTCCACCAGCGGAGGTGCCCCAAAACGCCCCTGCTGCCGAAGCTCCACCAGCTGAGGAGATCAAAGCTCCTacccctcctcctcctgcagAGCCCACCAGCGAGCCTCTGGAGTTGGTTGTAGAGGATGTCAATGATGTTTCGGTCACTATCCAGTGGAGACCTCCTGCTACCATTGGGAGCGCTGGCTTGGATGGATACACTGTGGAATCCTGCAAGGAAGGAACTGGTGATTGGAAGGCTGTTAATGAGGAGCTCACCATTTCCTGCCGTTATGTCATTAAGAACCAGACCACTGGTGACCGTCTCAACATCAGGGTGGTGGCTGTGAACGCTGGTGGCCGCAGCCCCCCTGCCACTTTACCTGATGCCGTCCTGGTCAGAGAAATTGTTGATCGCCCCAAGATTCGCCTGCCACGTTTCCTGAGGCAGCGCTATGTGATTAACGTTGGAGAGAAAGTCAACCTTGTCATCCCCTTTAGTGGCAAACCCCAGCCTGTTGTGACCTGGACAAAGGATGGACAGCCCCTTGACACCAAGAGGGTGAATATCCGCAACAGTGAAAGAGACAGCATCTTTTTCATCCGTGCATCTGAGCGAGCTGACTCTGGTGTCTATGAGATGTGTGTTAAAGTGGACAGCTTTGAAGACAAAGCCCAGCTGACTCTGCAGATTATTGAACTGCCAGGTCCACCAGCAAGCGTAAAGATTGTGGACGCCTGGGGGTTCAATGTTGCTTTGGAATGGACCGAGCCGAAGGATAATGGAAACACAACTATCACTGGATACACAGTGCAGAAGGCTGACAAAAAGACTGGGGACTGGTTCACAGTGCTGGAACACTATCACAGGCTGAATGCCACTGTCTCAGACCTGATCATGGGAAATACTTATGCTTTCAGGGTCTTCTCTGAGAACAAGTGTGGAATCAGCGAGAATGCCACTGTTACAAAGACCTCTGCCACCATCCAGAAGACAGGTATTGACTATAAACCACCAGACTACAAGGAACATAACTTCAGCGAGGCCCCCAAGTTCACCACCGGCATGCCAGACCGCTGCACCACTGTGGGCTACAGCACCAAGCTGCTATGCTCCGTCAGAGGATTCCCTAAGCCCAAGATTCAGTGGATGAAGAACCAGATGATCATCGGTGATGACCCCAAGTACAGGCAGATAAACAACCAGGGCATCTGCAGTCTGGAGATCCGCAAGCCTGGTAACTTCGATGGTGGTGTGTACACATGCAAGGCCATCAATGAACATGGTGAGGCGGTTGTCACCTGCAAGCTGGAGGTCAAACAAGCACTGATTCCTGATGCTGATAAGAAATAAGTCCTAAATTAGGAGCATCAGGATCACAATTTGCTCAAAAGGATTTTGAAGACACCGGTTGCtgacgcaaaaaaaaaaaaaatgtaatgaactgtacatataaaagaaataacCAGTCTTTTTCTTGTGTAACACTTCGACTCACAAATAGAGCACATCTATTATATAGGTATATCATCGACTGCCTATGGTTGAGACaactgtttatttgtttctatttatgtatgtatCTTCTGATACCTGGCACTGTCCTTATGTTTAAGACTGATCAAGTTTTTGCCTGTTAAAGGGATCATCTGCAGAAAAAGGGAAACgtttcagtgtttattaaaaataaattcatgccTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU28780 lncRNA upstream 86470 9769288 ~ 9769501 (+) True G24289
TU28774 lncRNA upstream 97005 9758585 ~ 9758966 (+) True G24283
XR_003403551.2 lncRNA upstream 116520 9738017 ~ 9739451 (+) True LOC113534952
TU28665 lncRNA upstream 186580 9658633 ~ 9669391 (+) True G24183
TU28657 lncRNA upstream 240508 9613112 ~ 9615463 (+) True G24178
TU28873 lncRNA downstream 332 9868607 ~ 9954984 (+) True G24354
TU28891 lncRNA downstream 70122 9938397 ~ 9941183 (+) False manbal
TU28932 lncRNA downstream 125287 9993562 ~ 9995992 (+) True G24390
TU28915 lncRNA downstream 137262 10005537 ~ 10010435 (+) False LOC117599366
XR_004579833.1 lncRNA downstream 137805 10006080 ~ 10010607 (+) True LOC117599366
XM_026921885.2 mRNA upstream 430 9788663 ~ 9855541 (+) True nav1b
XM_026913704.2 mRNA upstream 144133 9694499 ~ 9711838 (+) True pkp1b
XM_026929606.2 mRNA upstream 163005 9682331 ~ 9692966 (+) True smpd2b
XM_026929596.2 mRNA upstream 163005 9682331 ~ 9692966 (+) False smpd2b
XM_026916979.2 mRNA upstream 185435 9639372 ~ 9670536 (+) False tead3b
XM_034314745.1 mRNA downstream 6433 9874708 ~ 9923165 (+) False LOC113530691
XM_034314723.1 mRNA downstream 6434 9874709 ~ 9923165 (+) True LOC113530691
XM_026920933.2 mRNA downstream 27080 9895355 ~ 9923165 (+) False LOC113530691
XM_026920923.2 mRNA downstream 27151 9895426 ~ 9923165 (+) False LOC113530691
XM_026920222.2 mRNA downstream 70090 9938365 ~ 9941187 (+) True manbal
XR_004577034.1 other upstream 259117 9591941 ~ 9596854 (+) False LOC113532547
TU28587 other upstream 401509 9450925 ~ 9454462 (+) False hmga1b
TU28588 other upstream 401509 9450925 ~ 9454462 (+) True hmga1b
XR_003402786.2 other upstream 4102867 5717530 ~ 5753104 (+) False rbl1
TU26124 other upstream 4647107 5208346 ~ 5208864 (+) True G21901
TU28879 other downstream 26970 9895245 ~ 9907171 (+) False LOC113530691
TU29055 other downstream 329691 10197966 ~ 10198455 (+) True G24500
XR_003403740.2 other downstream 886240 10754515 ~ 10754622 (+) True LOC113537259
TU29627 other downstream 1037925 10906200 ~ 10908572 (+) True G25029
TU30526 other downstream 2336254 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2

Expression Profile