RNA id: XM_026926200.2


Basic Information

Item Value
RNA id XM_026926200.2
length 1576
RNA type mRNA
GC content 0.51
exon number 3
gene id LOC113533827
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 12364125 ~ 12385687 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGAGGTTTCCACAGCCAGTGGCCACGTCTAGCTTTAGACGTTCACCAAAattcacatactgtacattcccGTGAAGAACTCGTGTTTTACCGGCAAACCTGGTAATCAGAAGGCGCGTTAAGTTCTCCGCTGATGGTGGATTGTAGTTTAGCGTGTGGGCACAAACGGCAAAGTGTTCGCTCCACTGCGCGCTGCGGTGCTTCTGACGCGCGATGGAGAACCTTCAGAAAGATGCGACTTTCTGGCCGCTGAACAGATCACGGAGTGAGTCGAGCAGCGGAAACGAAAGTATAGCTGCAAACCGAACCGAGAACCCTCTGAAGCGCAACGAGGAGGTGGCCAAAGTGGAAGTGGCAGTGTTGTTTGTGGTGCTGCTGCTCGCACTGGCCGGTAACCTGTGCGTACTGGCGGCGCTTCACGCGAGCAAACGCGCGCGCTCGCGCATGCATTTCTTCATGAAACACCTGAGCATCGCGGATCTGGTGGTGGCCATCTTCCAGGTGCTGCCGCAGCTCATCTGGGATATCACGTTCCGCTTCTATGGGCCAGACTTCTTGTGCCGCTTGGTGAAGTATCTGCAGGTGGTGGGGATGTTTGCCTCCACATACCTGCTTGTGCTGATGTCCGTGGACAGGTGCCTTGCAGTATGCCAGCCTCTCCGCTCACTGCGGCGCAGGAAGGACCGTGAGTACGTTCTCGGGTCATGGCTCCTGAGCCTGCTGCTCAGCCTCCCACAGACATACATCTTCTCCCTCAAGGAAGTGGGCCAGGGGGTCTATGACTGCTGGGGAGACTTTGTGCAGCCATGGGGGGCAAAAGCCTACATAACCTGGATAAGCCTTACCATCTACATCATACCTGTTAccattctgagtgtgtgttatggccTCACAAGTTTTAAGATATGGCAAAACTTCAAGCAGAAGAGCAGAAAGGATCAGCCTCTAAGATTGTCTGGGGAGCTGGCCGATAGTGCAGCACTTTCACGCGTCAGCAGTGTGAGACTCATCTCTGAGGCGAAAATCAGGACGGTGAAAATGACATTTGTTGTCGTCTTGGCCTACATTGTGTGCTGGACGCCATTCTTCTTCGTGCAGATGTGGTCAGCTTGGGATCCTATGGCACCAAGAGAGGAAATGGCATTCATTATTACCATGCTTCTGGCTAGCCTGAACAGTTGCTGTAACCCCTGGATCTACATGTTCTTTGCTGGCCACCTGTTGCGTGACCTGATGCACAACTGCCTGATAACATTACGCTGTAACAGTGTGGGGCAGCAGAGTCCTAATGGCCATGCAGGAGAAATAGTGATGAAGGACACTGGCAGCCAGAGGAGCCTCACTCAAACATCGTAAACTACGTAACACAGCAGACTGCAAGGAAGGCAAGAGAAATGAGGACAAACTCTCTGCAAACCATGGCTGCAAATGGGGAAAACACCTACATATAGTTGACTTACAGAGGCTCTTTGGTCTGGACTTTACTGACTTGTACTATAAGAAAAGTTATTCATATGGACAGATACAATCATTAAAGACCTGATAATAAACCTCAGGACCAATGTATTAAAATACA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0045766 positive regulation of angiogenesis biological_process
GO:0048848 neurohypophysis morphogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004990 oxytocin receptor activity molecular_function
GO:0005000 vasopressin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004580102.1 lncRNA upstream 54625 12302924 ~ 12309500 (+) True LOC117599716
TU30592 lncRNA upstream 68083 12295611 ~ 12296042 (+) True G25886
TU30588 lncRNA upstream 70996 12292923 ~ 12293129 (+) True G25882
TU30578 lncRNA upstream 89073 12274852 ~ 12275052 (+) True G25872
TU30282 lncRNA upstream 326111 11946093 ~ 12038014 (+) True G25624
TU30616 lncRNA downstream 22634 12408321 ~ 12408523 (+) True G25907
TU30654 lncRNA downstream 89024 12474711 ~ 12475823 (+) True G25939
TU30618 lncRNA downstream 123952 12509639 ~ 12512658 (+) True G25909
TU30789 lncRNA downstream 343306 12728993 ~ 12730570 (+) False si:ch211-286o17.1
XR_004577066.1 lncRNA downstream 372812 12758499 ~ 12762286 (+) True LOC117595882
XM_026928938.2 mRNA upstream 94318 12260322 ~ 12269807 (+) True stau1
XM_026928919.2 mRNA upstream 94318 12260322 ~ 12269807 (+) False stau1
XM_026928928.2 mRNA upstream 94318 12260322 ~ 12269807 (+) False stau1
XM_026928946.2 mRNA upstream 94318 12260323 ~ 12269807 (+) False stau1
XM_026928955.2 mRNA upstream 94318 12260323 ~ 12269807 (+) False stau1
XM_026926400.2 mRNA downstream 8378 12394065 ~ 12402681 (+) True LOC113533905
XM_026918394.2 mRNA downstream 36468 12422155 ~ 12430457 (+) False tespa1
XM_026918367.2 mRNA downstream 36469 12422156 ~ 12432137 (+) True tespa1
XM_026918386.2 mRNA downstream 36469 12422156 ~ 12432137 (+) False tespa1
XM_026918377.2 mRNA downstream 36952 12422639 ~ 12432137 (+) False tespa1
TU30526 other upstream 156868 12204529 ~ 12207257 (+) False si:dkeyp-67f1.2
TU29627 other upstream 1455553 10906200 ~ 10908572 (+) True G25029
XR_003403740.2 other upstream 1609503 10754515 ~ 10754622 (+) True LOC113537259
TU29055 other upstream 2165670 10197966 ~ 10198455 (+) True G24500
TU28879 other upstream 2456954 9895245 ~ 9907171 (+) False LOC113530691
TU30617 other downstream 140483 12526170 ~ 12527491 (+) True G25908
TU31442 other downstream 880340 13266027 ~ 13331868 (+) False si:dkey-238f9.1
XR_004577014.1 other downstream 1110169 13495856 ~ 13499365 (+) False tshba
XR_004577009.1 other downstream 1110170 13495857 ~ 13499365 (+) False tshba
XR_004577011.1 other downstream 1110170 13495857 ~ 13499365 (+) False tshba

Expression Profile