RNA id: XM_026926533.2


Basic Information

Item Value
RNA id XM_026926533.2
length 2322
RNA type mRNA
GC content 0.47
exon number 10
gene id lrrc41
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 16464943 ~ 16475146 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cGGAACTTGTTTACGTTGGCGTACTTCACGCGCCAGCACTCGCTTACAGCTACATCATGTGCACGTAAACAGAATCTGCTTATACATTTTCAGTCCATGTGTGTCAGATCAGATCAGTTATTTTAagaatgtgatttaaaaaaaaaccttacaaacaaaaacaaacaaactctgaGGCTTTCCTTCAGCAGGAGGAAGGATTTGTTGGTTTCAGTTTCAACTGTTCTGTTTCCAAACATGGGCAGCTTCACTCTGGTGCAGATGTGCATCAGGAAAGTGGCTCAGCATATGGACGTGCTGGAGAGTCAAGCTGGGGATTTGCCAGCCTCACTTCTTAAAGACTTGATGCCTCACCTGAACATGTACTACCTGGACAGGATTGAAAAAGCAGCTCGTCTAAAAGGAGTCTCATGTTCATCTGCATGGGCAGCAAAATGGAGGGAGCTGAATCGCACATGGCGCTGGAAGTTAAAGTTTCTGCAGCCGGAGAAGGAAGACTGGAAGCAGATGTGCTTGGAGAGCTATTTTCACACGGTGCTGTTCAGAAGGTCACAAGCACAAAGCTCTGCTTTTGACATGAATGATAGTGCGGTTCTCTCGGTGTCAGCCAAGTACGTGcgggttctctctctcttcacggTGCATGATGTGCGCAGGTTAGCCTCAGAGGAACTACGGCTCATCCTGGCCACTCTGGAGAAGGAAGTGAGGACACTCAGGTTGCTTGATGCCAAGATGTTGCTCAGACACAGAAAGTCAGATGTCCTCTTTGTTCTGCACCGTCTTCTCGACCACGGCTCAGTTAAAAAGCTAGTTCTGAAGAGGACTCCGGATTTGTATGTCTTCAGATGGATTATGTCCAGATGTAAGGGCTGTAGCTGGAGTGATGAGGGTCCTGCAGCATCCAAACGCCCTCGGCTGCATCTGCTCATGGACGAGACAGTATACAGCAAGTTCTGTCCTTCATGTAGTGCTAACGGGATGTGTCCCGAGGGACAGATTCACTCAGTGGACCTGGAGGTTTGTTCATTGACGGCAGTGTCTCGCCTCCTTCCTTCCTGGCTGGGTCTCCGCTCACTTCACCTGTGCACCACCCAGCTTGTTTGTGAGAAGGAAGTGGTTGACTTGGTGGAGTCTCTCAGAAAGCTTTTCCTGAACCCACACTGTTCCCTCAAAGACCTGAGCCTTGGTAACATGTGTGTTCAGGGTCATTTAGCCAGCTTGCTGATTTCCTGCCCCTCACTGCGGACCCTCTCCCTGGACATCAGCCTGCGGTGGGACTGCAGCACCACATCCAGCGTACAGTTCACACCAAACATGCAACTCTCTCTTGAGAAACTCACCTTGAAGGCAGTCGAGAACCAAACAACTGTAGAGTGTTTACCAGCTGTGCTTCAACACGCTCCAAATCTCAGCAGCCTTCACGTCACAGGAATACGGCAGGCTCGCTCCCTACTACACACATTGCCAGAGTCCAGTCCATTCCTGAAGGTACTGATGCTGGAAGACATAAACCTGGCAGACTGTCACCATGAGATTATTCATCTACTAGAGAACTCCATTTTGGAAGAGCTGTCCTTGAAAGACTGTAGGCTGCTAGAGAAGTGCACGGAGAAGAAAGACTTCCTGGTTCCATTTGTAGCATCTGCAAAGGAACTTTCTTCCCttcgctctctgtctctgtctcagaaTCGGCTTGCTTCAAGCGTCATTGAGGTTGCAGATCTGTTTTTAGGAGAACATCCTGGCAACATAATCAAATTGGACCTCAGCTCAAACTTCATCCTCCCTGCTGACCTGCTGGAGTTCAGCCGAAGAATCGTAGCATACCATCCCCTTCACCGATTCACACTAGACCTGCGCTTTAACCCACTTAATCGTGACcctgaggtcaaaggtcaagccCTGAGGATGCTCCTTCCGTTCTGTGAAGTTCTGACTGATGAATGGGACTTCAGATCGGCCATGGTAGATCACGTTAGTGTGATGTGAAGAGACATTTAATGCTAGATACACACAGTACTGGGAGTGGAACAATGTTAAAAAACATCGATGAAGGATGGATTCTGATGCTTACAACACTGCTGTGCCCCAAACAAACTGAGgctttgtgtgatttgtgtgtttggcttcctcatatttaaaacaaaattttacTTAACTTTCCACATGATCCAAATGATGATCCTGAATGCTGAGTGTTTCAGATTTGATATCTGACCATATACCAAAATTGAATTTAGAATGTTTCTTCTAAATGTTTCACTTtcataagtttaaaaaatgtattatttttggaATAAATCCATTGTTTCTACTGTA

Function

GO: NA

KEGG:

id description
K10347 LRRC41, MUF1; leucine-rich repeat-containing protein 41

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33555 lncRNA upstream 24172 16436121 ~ 16440771 (+) True G28446
TU33520 lncRNA upstream 63832 16398430 ~ 16401111 (+) False tomm6
TU33525 lncRNA upstream 63832 16398430 ~ 16401111 (+) False tomm6
TU33518 lncRNA upstream 63877 16398430 ~ 16401066 (+) False tomm6
XR_004579529.1 lncRNA downstream 13932 16489078 ~ 16494312 (+) True LOC117599087
TU33701 lncRNA downstream 58729 16533875 ~ 16535345 (+) True G28574
TU33821 lncRNA downstream 254068 16729214 ~ 16731205 (+) True G28676
XR_003402553.1 lncRNA downstream 367098 16842244 ~ 16843385 (+) True LOC113524191
TU34038 lncRNA downstream 577784 17052930 ~ 17053746 (+) True G28865
XM_026943326.2 mRNA upstream 1407 16460401 ~ 16463536 (+) True LOC113544464
XM_026938693.2 mRNA upstream 63844 16398409 ~ 16401099 (+) False tomm6
XM_026938484.2 mRNA upstream 70936 16391412 ~ 16394007 (+) True tspo
XM_026938572.2 mRNA upstream 70936 16391415 ~ 16394007 (+) False tspo
XM_026924529.2 mRNA upstream 99006 16363671 ~ 16365937 (+) True ppil1
XM_026913984.2 mRNA downstream 578986 17054132 ~ 17066099 (+) True hyi
XM_034298932.1 mRNA downstream 704097 17179243 ~ 17184683 (+) True LOC117595909
XM_034298935.1 mRNA downstream 704098 17179244 ~ 17184681 (+) False LOC117595909
XM_026917771.2 mRNA downstream 917183 17392329 ~ 17396139 (+) True glulb
XM_026917748.2 mRNA downstream 958202 17433348 ~ 17437899 (+) True znf648
TU33403 other upstream 282640 16181318 ~ 16182303 (+) False mustn1a
XR_004580083.1 other upstream 1170589 15278827 ~ 15294354 (+) False fancd2
trnaf-gaa_15 other upstream 1273287 15191584 ~ 15191656 (+) True trnaf-gaa_15
XR_004577012.1 other upstream 2963647 13498298 ~ 13501296 (+) False tshba
XR_004577013.1 other upstream 2965578 13496154 ~ 13499365 (+) False tshba
TU34871 other downstream 2299624 18774770 ~ 18826920 (+) False G29569
trnai-aau other downstream 2342256 18817402 ~ 18817475 (+) True trnai-aau
TU35395 other downstream 3059295 19534441 ~ 19537014 (+) False smx5
XR_003403752.1 other downstream 3634984 20110130 ~ 20110225 (+) True LOC113537321
TU36319 other downstream 4539712 21014858 ~ 21017447 (+) False insl5a

Expression Profile