RNA id: XM_026926703.2


Basic Information

Item Value
RNA id XM_026926703.2
length 1913
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC113534100
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20250115 ~ 20258553 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTAAAGCAAACCGCGCAGAGGAGGAGGGGGGAATTGCTTCATGCTCACCTTTCTCAGCCTTTTAGCAGACTCATCATATTGAATAATTAGTGGTTTTGCTGTACTTATAAACTCGTAACTTATCAAATTTTAAGTCAGAATTGCTCGTCCTCGGCATCgcatatttgtcatattttttaatgtatttgaacAACCCTCCGTTATTTTCCGTGTGGTATAAACCAGCGGAGCCCCTTTAACAGAAGGCCAGTGTATTGAGAAGtcgtgttgtttttttaatcgttTGCTCATGCGGTGTTTATAAGTTGAAGGGCCAAGGAGTCACATCAGTCCAAAACCAACCAACAGGCAATCTTCTTGTCATCCAAGTGTTCAATGCCTAACACTGCAGAAAGTGAAGGCGGTAACATATCTGGTGCCAAGGATCCGGCACCCCCATCACGGTTGCCGGGCCAAGACGATGAGCGCGGCTTCCTGAACTCATTCAGCCGTGATACGCTGCGCGCCAGACGGGCCTCCAGCGCTGAGCTGCAGCTCCCGTGGACATGCCCGGTCACACATTCCCGGGAGAAATTCTACACAGTGTGCTCTGATTATGCACTGCTCAACCAAGCCCGTCCAATCCTCACCCCCAGAGATGTTCCCCAGTCCAGCCATGACAGCAGCACACCACTGAGTCAATCAAACACCATCACTATCTCCCAGGGTCAGGCTGGAGGAATCCATACACCTTCAGGTGATGCCTGTGATATAGAAGACACATTCTCCAGCAACTCCAAGCCCATTTTAGCCTGGGAGATCGACACCACTGACTTTGATGCCGTTTTAACCCGAAAAGCCAGGACAGGTAATATAAAGAAATTTGGCTTGAAGAAAATGAAGTCATCTGACCGATCGAGCAGAAATGTGCTAGATCTTCCACCACAAGCGTCTCTGGAAGAAATCAAACAGAGGAAAGTCCTGGACTTGCGCAGATGGTACTGCATCAGCCGCCCTCAGTATAAAACTTCATGTGGCATTTCCTCACTCGTCTCTTGCTGGAACTTTCTGTACAGTACCCTTGGAGCTGGAAGcCTTCCACCCATTTCCCAGGAGGAGGCCTTGCATATTCTCGGTTTCCAGCCTCCATTTGAAGATATCAAGTTTGGACCTTTTACTGGGAATGCCACTTTAATGAGATGGTTCAGACAGATCAATGACCATTTCCGTGTTCGAGGATGCTCTTATATTCTATATAAACCCCATGGGAAGCACAAGACAGCAGGAGAGACAGCTGAAGGAGCTTTGCTTAAGCTGACCCAGGGATTGAGAGATGAATCTATGGCCTATATTTACCACTGTCAGAACCACTACTTCTGCCCTGTGGGCTTCGAAGCTACACCATTAAAAGCAGCCAAAGCTTACAGggGACCACTTGCTCTCAATGAAATGGAGCATTGGATTCTTATTGGGGAGCCAAGCAGGAAACATCCTGCCATCCActgtaaaaaGTGGGCAGATATTGTGACTGACCTGAACACACAGAACCCAGAATACTTGGACATTCGCCATACAGAAAGAGGCATTCAGTTTCGGAAAACCAAAAAGGTGGGAGGCAACCTACACTGTCTCATGGCCTTCCAAAGGGTGAACTGGCAGAAAATCGGACCTTGGGCACTAAACCTGGAGAATCTGAGGCATGATAACCACCAACAGGGAGCAGATCACAGGAGCCAGACTTCAGCAGGGGAGGCTGTAGACGATGGCGAGACCAAACACGGGCACCTGGGCCGCTCTCACTGCACGGGGAATCAGAAATCAGAGCAAGCGTGGAAACGGATCTCCAATACTGCAGAGTACAGCCACAGAGGCTGCCCCGACAGCGATCTGGATGAGGACATCGCTGACTGAAAATGAAGTGGTTACTTCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35912 lncRNA downstream 1606 20248166 ~ 20248509 (-) True G30423
TU35911 lncRNA downstream 2778 20247111 ~ 20247337 (-) True G30422
TU35910 lncRNA downstream 3244 20246605 ~ 20246871 (-) True G30421
TU35898 lncRNA downstream 42383 20199533 ~ 20207732 (-) True G30412
XR_004579569.1 lncRNA downstream 50599 20197220 ~ 20199516 (-) True LOC117599142
TU35920 lncRNA upstream 56285 20314838 ~ 20315511 (-) True G30428
TU35992 lncRNA upstream 101288 20359841 ~ 20360828 (-) False pex5la
TU36004 lncRNA upstream 145656 20404209 ~ 20404408 (-) True G30507
TU36047 lncRNA upstream 221559 20480112 ~ 20480726 (-) True G30550
TU36048 lncRNA upstream 222627 20481180 ~ 20482701 (-) True G30551
XM_034311036.1 mRNA downstream 4107 20207755 ~ 20246008 (-) False nme7
XM_026923896.2 mRNA downstream 4107 20207755 ~ 20246008 (-) False nme7
XM_026923886.2 mRNA downstream 4107 20207755 ~ 20246008 (-) False nme7
XM_034311031.1 mRNA downstream 4107 20221740 ~ 20246008 (-) True nme7
XM_026923691.2 mRNA downstream 66821 20172128 ~ 20183294 (-) True dpt
XM_026943439.2 mRNA upstream 6760 20265313 ~ 20310226 (-) True tmem131
XM_026927143.2 mRNA upstream 66305 20324858 ~ 20328459 (-) True mrpl47
XM_026917435.2 mRNA upstream 101169 20359722 ~ 20429325 (-) False pex5la
XM_026917418.2 mRNA upstream 101169 20359722 ~ 20429325 (-) False pex5la
XM_026917428.2 mRNA upstream 101169 20359722 ~ 20429325 (-) False pex5la
trnap-cgg_1 other downstream 863602 19386442 ~ 19386513 (-) True trnap-cgg_1
trnap-ugg_1 other downstream 869603 19380441 ~ 19380512 (-) True trnap-ugg_1
trnap-ugg other downstream 1432917 18817127 ~ 18817198 (-) True trnap-ugg
trnag-ucc other downstream 1433785 18816259 ~ 18816330 (-) True trnag-ucc
TU34886 other downstream 1443365 18794032 ~ 18806750 (-) False LOC113537624
XR_004580158.1 other upstream 1205308 21463861 ~ 21531428 (-) False raver2
XR_004580163.1 other upstream 1205308 21463861 ~ 21531428 (-) False raver2
XR_004580160.1 other upstream 1205308 21463861 ~ 21531428 (-) False raver2
XR_004580156.1 other upstream 1205308 21463861 ~ 21531428 (-) False raver2
XR_004580159.1 other upstream 1205308 21463861 ~ 21531428 (-) False raver2

Expression Profile