RNA id: XM_026926725.2


Basic Information

Item Value
RNA id XM_026926725.2
length 1291
RNA type mRNA
GC content 0.44
exon number 9
gene id zgc:172121
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20245574 ~ 20249458 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACCCGGAAATGATCCTTTGACCCCTAGATTTGTTATTGTGCTGCAAGAGTTTACAACAAGTTTAATGGAAACCAGGAGATCACGTTTTCTACATtcgaatattattattatttatttctcttttatttttgcagttttttttaactaaggAGTCACATTAAGGGTGTTGTCTCTGTCCCATGGTGAGCAGCTTGACTCTGTGGCATTGCAGAAGTTGTAATCATTTATACACAGGTGTCATTAGTAGATCCACCCTACAACAGCCGCCATGGCCTGCACACCATTTATTCTGGACGGTGGAATGTCAACAGAATTGGAGGAAAGAGGATTTCACATTCAGGGAGATCCTTTATGGAGTGCAAGAATTTTGTATACAAATCCAAATGCTGTTAAGGAAGCACATTACAGCTTTCTTCAGTGTGGATCTGATGTTATCACAACAGCCACATACCAGGCTAGTATTGAAGGATTCACCAAGCATCTTGGTCTTAAACCTGAGGAGGCCGAGGACTTAATGATGTCAGGGGTCCGATTAGCTAAAGAGGCAGCAGCAGACTTCATGGCCAGCTGTTTAACAGCAGacagaaaagtGCCTTTGGTGGCAGGTTCAGTGGGACCTTTTGGGGCTTTTTTACATGACGGTTCAGAGTACACAGGGCTCTATGCAAGCAGCATGAGCATAGAGGAGCTGAAGAATTGGCATCGGCCACAGATTCGCTGTTTAGTGGCTGCAGGGGTTGATCTACTTGCATTGGAGACCATACCGAGTCTTAAAGAGGCAGAGGCTTTGGTGGAGCTGCTGAGGGAGTTCCCTGATGCTAAAGCCTGGCTTTCCTTTTCCTGCAAGGACACCCAGAGTATTTCAGATGGCAACAGGTTTGCCAAGGCTGTTCAGGTGGCCAGTAACTCCCCTCAGCTGGTTGCTGTTGGGGTGAACTGTTCCCCACCTGCTCTAGTGAAACCTCTTCTCGAATCCGCCAAGTCACATAAGTCAGCTGACATGAGCTGGGTGATCTATCCAAACAGTGGGGAAGACTGGGATCCAAGCACAGGATggaaaccagaaaaaaagattCCATTTACAGAGCTAAGTGTCGAGTGGAAAGAACAAGGGGCTTTATGGATTGGAGGCTGTTGCCGTATCAGTCCTGCTGACATTGCACAATTAAAAAGTCGATTAACCAATACGCAATaatcacagtcacacacacaaaacatcacactGATCAGTAGACCACTGTGTTTTACAAGaaattgtataaatatttattaagaaataaaagtgaCCAC

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008898 S-adenosylmethionine-homocysteine S-methyltransferase activity molecular_function

KEGG:

id description
K00547 mmuM, BHMT2; homocysteine S-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35863 lncRNA upstream 11209 20233975 ~ 20234772 (+) True G30382
TU35759 lncRNA upstream 206007 20037735 ~ 20039974 (+) False G30288
TU35929 lncRNA downstream 84285 20333743 ~ 20334121 (+) True G30436
TU35935 lncRNA downstream 111132 20360590 ~ 20361838 (+) True G30442
TU35938 lncRNA downstream 118355 20367813 ~ 20368152 (+) True G30445
TU35941 lncRNA downstream 123248 20372706 ~ 20373062 (+) True G30448
TU35948 lncRNA downstream 131312 20380770 ~ 20380982 (+) True G30455
XM_026923907.2 mRNA upstream 38228 20199525 ~ 20207753 (+) True atp1b1a
XM_026921295.2 mRNA upstream 133462 20104204 ~ 20112519 (+) True rpl5b
XM_034310260.1 mRNA upstream 225755 20000046 ~ 20020226 (+) True LOC113543059
XM_034311038.1 mRNA downstream 9363 20258821 ~ 20265493 (+) True si:ch211-201h21.5
XM_026927129.2 mRNA downstream 65567 20315025 ~ 20324579 (+) True actl6a
XM_026942739.2 mRNA downstream 79985 20329443 ~ 20333691 (+) True ndufb5
XM_026917400.2 mRNA downstream 86173 20335631 ~ 20359651 (+) False usp13
XM_026917375.2 mRNA downstream 86174 20335632 ~ 20359651 (+) False usp13
XR_003403752.1 other upstream 135756 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 708967 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 1419061 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 1428506 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 4063678 16181318 ~ 16182303 (+) False mustn1a
TU36319 other downstream 765400 21014858 ~ 21017447 (+) False insl5a
XR_004579462.1 other downstream 2348883 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 3226493 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 3770920 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 4403532 24652990 ~ 24653965 (+) False LOC117598985

Expression Profile