RNA id: XM_026927129.2


Basic Information

Item Value
RNA id XM_026927129.2
length 1571
RNA type mRNA
GC content 0.47
exon number 14
gene id actl6a
representative True

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 20315025 ~ 20324579 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGGAAGGGGGCGACGCTGTACTTCTGAGTTCAGATCACCTCCGTTATTGTTCACCACAGAGGAAGATGTCCGTCTCGTTTCCTTTGTTGTGATGAATTCCTTATTataaaagaagaagacaaaatTGCGGATTTAGATTTAATCAGGGAcggtttagttttatttgtgatAAGTAAATCTACATCCATCATTGGCTATAATGAGTGGAGGAGTGTATGGCggggACGAGGTTGGCGCGCTGGTGTTTGATATCGGCTCCTACTCCGTGAGGGCTGGTTATGCTGGAGAGGACTGCCCCAAGGCTGACTTCCCCACCGTGATTGGCGTGACTGTGGACAGGGAAGATGGCACTACACCGATGGAAACAGATGGGGATAAGGGCAAGCAAAGTGGAACGACATACTACATCGATACCAACCAGCTCAGGGTGCCACGGGAAAACATGGAGGTCATGTCACCTCTTAAAAATGGCATGATTGAAGACTGGGACAGCTTTCAGGCCATTTTGGACCACACCTACAGAATGCACTTCAAATCCGAGCCTAGCTTGCATCCTGTGCTGATGTCAGAAGCCTCTTGGAACACACGAGCCAAGAGGGAGAAGCTGACAGAGCTTATGTTTGAGCATTACAACATCCCTGCTTTCTTCTTGTGTAAAACAGCCGTCCTGTCTGCATTTGCAAATGGACGATCCACTGGTTTGGTGTTAGACAGCGGTGCGACGCACACGACTGCTATTCCAGTGCATGATGGTTATGTCCTGCAGCAAGGCATTGTCAAGTCCCCACTTGCAGGTGACTTCATGAGCATGCAGTGTAGAGAGCTGTTTCAGGAATTAAATGTCGAAATCATTCCCCCATACATGATTGCATCAAAGGATTCAGTACGTGAAGGTGCACCAGCCAGctggaagaagaaagagaaactaCCTCAAGTTACTCGCTCATGGCATAACTACATGTGTAATACTGTTATTCAAGATTTCCAGGCCTCAGTCTTGCAGGTTTCAGATTCACCTTATGATGAACAGGTGGCTGTTCAGATGCCGACTGTTCACTATGAGCTGCCTAATGGCTACAACTGTGACTTTGGAGCTGAACGACTGAAGATTCCTGAGGGGCTTTTTGACCCTTCTAATGCAAAGggCCTGTCAGGAAACACCATGCTTGGAGTAGGCCATGTTGTGACCACCAGTGTTGGCATGTGTGACGTTGATATCCGACCAggtCTGTATGGCAGTGTGATAGTTACTGGAGGAAACACTCTCATCCAAGGATTTACAGACAGACTAAACAGAGAACTGTCTCAGAAGACACCACCGAGTATGCGCTTGAAGTTAATAGCCAACAATACGACTCTGGAGCGCAGGTTCAGTGCCTGGATCGGAGGGTCTATCCTGGCATCACTGGGAACCTTCCAACAAATGTGGATTTCCAAGCAGGAGTATGAGGAAGGAGGGAAGCAGTGTGTAGAGAGGAAGTGCCCTTGACCAACTCCAGCTTTTTTTGCCATTTGATtctttaactaaaaaaaagaaaaaaaaaagtttctggtAGAACAGGCCTTCTTA

Function

GO: NA

KEGG:

id description
K11340 ACTL6A, INO80K; actin-like protein 6A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35863 lncRNA upstream 80253 20233975 ~ 20234772 (+) True G30382
TU35759 lncRNA upstream 275051 20037735 ~ 20039974 (+) False G30288
TU35929 lncRNA downstream 9164 20333743 ~ 20334121 (+) True G30436
TU35935 lncRNA downstream 36011 20360590 ~ 20361838 (+) True G30442
TU35938 lncRNA downstream 43234 20367813 ~ 20368152 (+) True G30445
TU35941 lncRNA downstream 48127 20372706 ~ 20373062 (+) True G30448
TU35948 lncRNA downstream 56191 20380770 ~ 20380982 (+) True G30455
XM_034311038.1 mRNA upstream 49532 20258821 ~ 20265493 (+) True si:ch211-201h21.5
XM_026926725.2 mRNA upstream 65567 20245981 ~ 20249458 (+) True zgc:172121
XM_034311045.1 mRNA upstream 65664 20245574 ~ 20249361 (+) False zgc:172121
XM_026923907.2 mRNA upstream 107272 20199525 ~ 20207753 (+) True atp1b1a
XM_026921295.2 mRNA upstream 202506 20104204 ~ 20112519 (+) True rpl5b
XM_026942739.2 mRNA downstream 4864 20329443 ~ 20333691 (+) True ndufb5
XM_026917400.2 mRNA downstream 11052 20335631 ~ 20359651 (+) False usp13
XM_026917375.2 mRNA downstream 11053 20335632 ~ 20359651 (+) False usp13
XM_026917393.2 mRNA downstream 11053 20335632 ~ 20359651 (+) False usp13
XM_026917366.2 mRNA downstream 11054 20335633 ~ 20359651 (+) True usp13
XR_003403752.1 other upstream 204800 20110130 ~ 20110225 (+) True LOC113537321
TU35395 other upstream 778011 19534441 ~ 19537014 (+) False smx5
TU34871 other upstream 1488105 18774770 ~ 18826920 (+) False G29569
trnai-aau other upstream 1497550 18817402 ~ 18817475 (+) True trnai-aau
TU33403 other upstream 4132722 16181318 ~ 16182303 (+) False mustn1a
TU36319 other downstream 690279 21014858 ~ 21017447 (+) False insl5a
XR_004579462.1 other downstream 2273762 22598341 ~ 22602338 (+) False tmem69
trnaf-gaa_16 other downstream 3151372 23475951 ~ 23476023 (+) True trnaf-gaa_16
TU38551 other downstream 3695799 24020378 ~ 24021036 (+) True G32684
TU38758 other downstream 4328411 24652990 ~ 24653965 (+) False LOC117598985

Expression Profile